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2PW0
Biol. Unit 1
Info
Asym.Unit (132 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANS-ACONITATE BOUND TO METHYLACONITATE ISOMERASE PRPF FROM SHEWANELLA ONEIDENSIS
Authors
:
G. S. Garvey, I. R. Rayment
Date
:
10 May 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: B (1x)
Keywords
:
Propionate Catabolism, Diaminopimelate Epimerase Like, Aconitate Binding, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. S. Garvey, C. J. Rocco, J. C. Escalante-Semerena, I. Rayment
The Three-Dimensional Crystal Structure Of The Prpf Protein Of Shewanella Oneidensis Complexed With Trans-Aconitate: Insights Into Its Biological Function.
Protein Sci. V. 16 1274 2007
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: TRICARBALLYLIC ACID (TRCa)
2b: TRICARBALLYLIC ACID (TRCb)
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No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
TRC
2
Ligand/Ion
TRICARBALLYLIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE B:144 , ASN B:219 , ALA B:220 , ILE B:222 , PRO B:223 , HOH B:2080 , HOH B:2159
BINDING SITE FOR RESIDUE EDO B 2045
2
AC2
SOFTWARE
ALA A:333 , GLU A:347 , LYS A:348 , GLU A:349 , GLN A:365 , ALA A:366 , TRP A:373
BINDING SITE FOR RESIDUE EDO A 2046
3
AC3
SOFTWARE
ASN A:219 , ALA A:220 , PRO A:223 , HOH A:2066 , HOH A:2124
BINDING SITE FOR RESIDUE EDO A 2047
4
AC4
SOFTWARE
GLU A:166 , ASP A:168 , ARG A:352 , HOH A:2193
BINDING SITE FOR RESIDUE EDO A 2048
5
AC5
SOFTWARE
PRO B:33 , GLU B:34 , HOH B:2112 , HOH B:2228
BINDING SITE FOR RESIDUE EDO B 2049
6
AC6
SOFTWARE
ALA B:333 , GLU B:347 , LYS B:348 , GLU B:349 , ALA B:364 , GLN B:365 , ALA B:366
BINDING SITE FOR RESIDUE EDO B 2050
7
AC7
SOFTWARE
SER A:22 , SER A:69 , SER A:70 , LYS A:73 , CYS A:107 , ASN A:109 , HIS A:278 , LYS A:281 , SER A:312 , MET A:313 , HIS A:317 , MET A:321 , GLY A:322 , HOH A:2511 , HOH A:2512 , HOH A:2513 , HOH A:2514
BINDING SITE FOR RESIDUE TRC A 2001
8
AC8
SOFTWARE
SER B:22 , SER B:69 , SER B:70 , LYS B:73 , ASN B:109 , LYS B:281 , HIS B:317 , MET B:321 , GLY B:322 , HOH B:2457 , HOH B:2459 , HOH B:2460 , HOH B:2461
BINDING SITE FOR RESIDUE TRC B 2002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pw0a1 (A:6-185)
1b: SCOP_d2pw0a2 (A:186-397)
1c: SCOP_d2pw0b1 (B:5-185)
1d: SCOP_d2pw0b2 (B:186-397)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Diaminopimelate epimerase-like
(37)
Superfamily
:
Diaminopimelate epimerase-like
(37)
Family
:
automated matches
(15)
Protein domain
:
automated matches
(15)
Shewanella oneidensis [TaxId: 70863]
(2)
1a
d2pw0a1
A:6-185
1b
d2pw0a2
A:186-397
1c
d2pw0b1
B:5-185
1d
d2pw0b2
B:186-397
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Biol.Unit 2 (127 KB)
Header - Biol.Unit 2
Biol.Unit 3 (68 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
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