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2PW0
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (126 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (68 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANS-ACONITATE BOUND TO METHYLACONITATE ISOMERASE PRPF FROM SHEWANELLA ONEIDENSIS
Authors
:
G. S. Garvey, I. R. Rayment
Date
:
10 May 07 (Deposition) - 21 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A (1x)
Biol. Unit 4: B (1x)
Keywords
:
Propionate Catabolism, Diaminopimelate Epimerase Like, Aconitate Binding, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
G. S. Garvey, C. J. Rocco, J. C. Escalante-Semerena, I. Rayment
The Three-Dimensional Crystal Structure Of The Prpf Protein Of Shewanella Oneidensis Complexed With Trans-Aconitate: Insights Into Its Biological Function.
Protein Sci. V. 16 1274 2007
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: TRICARBALLYLIC ACID (TRCa)
2b: TRICARBALLYLIC ACID (TRCb)
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No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
TRC
2
Ligand/Ion
TRICARBALLYLIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE B:144 , ASN B:219 , ALA B:220 , ILE B:222 , PRO B:223 , HOH B:2080 , HOH B:2159
BINDING SITE FOR RESIDUE EDO B 2045
2
AC2
SOFTWARE
ALA A:333 , GLU A:347 , LYS A:348 , GLU A:349 , GLN A:365 , ALA A:366 , TRP A:373
BINDING SITE FOR RESIDUE EDO A 2046
3
AC3
SOFTWARE
ASN A:219 , ALA A:220 , PRO A:223 , HOH A:2066 , HOH A:2124
BINDING SITE FOR RESIDUE EDO A 2047
4
AC4
SOFTWARE
GLU A:166 , ASP A:168 , ARG A:352 , HOH A:2193
BINDING SITE FOR RESIDUE EDO A 2048
5
AC5
SOFTWARE
PRO B:33 , GLU B:34 , HOH B:2112 , HOH B:2228
BINDING SITE FOR RESIDUE EDO B 2049
6
AC6
SOFTWARE
ALA B:333 , GLU B:347 , LYS B:348 , GLU B:349 , ALA B:364 , GLN B:365 , ALA B:366
BINDING SITE FOR RESIDUE EDO B 2050
7
AC7
SOFTWARE
SER A:22 , SER A:69 , SER A:70 , LYS A:73 , CYS A:107 , ASN A:109 , HIS A:278 , LYS A:281 , SER A:312 , MET A:313 , HIS A:317 , MET A:321 , GLY A:322 , HOH A:2511 , HOH A:2512 , HOH A:2513 , HOH A:2514
BINDING SITE FOR RESIDUE TRC A 2001
8
AC8
SOFTWARE
SER B:22 , SER B:69 , SER B:70 , LYS B:73 , ASN B:109 , LYS B:281 , HIS B:317 , MET B:321 , GLY B:322 , HOH B:2457 , HOH B:2459 , HOH B:2460 , HOH B:2461
BINDING SITE FOR RESIDUE TRC B 2002
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pw0a1 (A:6-185)
1b: SCOP_d2pw0a2 (A:186-397)
1c: SCOP_d2pw0b1 (B:5-185)
1d: SCOP_d2pw0b2 (B:186-397)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Diaminopimelate epimerase-like
(37)
Superfamily
:
Diaminopimelate epimerase-like
(37)
Family
:
automated matches
(15)
Protein domain
:
automated matches
(15)
Shewanella oneidensis [TaxId: 70863]
(2)
1a
d2pw0a1
A:6-185
1b
d2pw0a2
A:186-397
1c
d2pw0b1
B:5-185
1d
d2pw0b2
B:186-397
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (126 KB)
Header - Biol.Unit 1
Biol.Unit 2 (127 KB)
Header - Biol.Unit 2
Biol.Unit 3 (68 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
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