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2PVS
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (73 KB)
Biol.Unit 3 (548 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PANCREATIC LIPASE RELATED PROTEIN 2 MUTANT N336Q
Authors
:
S. Spinelli, C. Eydoux, F. Carriere, C. Cambillau
Date
:
10 May 07 (Deposition) - 18 Dec 07 (Release) - 20 Jan 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (4x)
Keywords
:
Lipase, Galacto Lipids Hydrolysis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Eydoux, S. Spinelli, T. L. Davis, J. R. Walker, A. Seitova, S. Dhe-Paganon, A. De Caro, C. Cambillau, F. Carriere
Structure Of Human Pancreatic Lipase-Related Protein 2 With The Lid In An Open Conformation.
Biochemistry V. 47 9553 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:107 , HIS A:108 , ARG A:111 , LYS B:80
BINDING SITE FOR RESIDUE SO4 A 451
02
AC2
SOFTWARE
HIS A:108 , ARG A:111
BINDING SITE FOR RESIDUE SO4 A 452
03
AC3
SOFTWARE
LYS A:80 , ASP A:83 , ARG B:107 , HIS B:108 , ARG B:111
BINDING SITE FOR RESIDUE SO4 A 453
04
AC4
SOFTWARE
GLU A:43 , ASN A:44 , PRO A:45 , ASN A:46 , ASN A:47
BINDING SITE FOR RESIDUE SO4 A 454
05
AC5
SOFTWARE
PHE A:314 , GLY A:316 , LYS A:317 , THR A:318
BINDING SITE FOR RESIDUE SO4 A 455
06
AC6
SOFTWARE
GLU A:187 , ARG A:190 , ASP A:192 , ASP A:195
BINDING SITE FOR RESIDUE CA A 502
07
AC7
SOFTWARE
HIS B:108 , ARG B:111
BINDING SITE FOR RESIDUE SO4 B 451
08
AC8
SOFTWARE
ASN B:44 , PRO B:45 , ASN B:46 , ASN B:47
BINDING SITE FOR RESIDUE SO4 B 452
09
AC9
SOFTWARE
LYS B:315 , GLY B:316 , LYS B:317 , THR B:318 , SER B:319
BINDING SITE FOR RESIDUE SO4 B 453
10
BC1
SOFTWARE
GLU B:187 , ARG B:190 , ASP B:192 , ASP B:195 , HOH B:511
BINDING SITE FOR RESIDUE CA B 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:146-155,B:146-155)
2: PLAT (A:338-450,B:338-450)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPR2_HUMAN
165-174
2
A:146-155
B:146-155
2
PLAT
PS50095
PLAT domain profile.
LIPR2_HUMAN
357-469
2
A:338-450
B:338-450
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2pvsa2 (A:337-450)
1b: SCOP_d2pvsb2 (B:337-450)
2a: SCOP_d2pvsa1 (A:-2-336)
2b: SCOP_d2pvsb1 (B:-2-336)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2pvsa2
A:337-450
1b
d2pvsb2
B:337-450
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2pvsa1
A:-2-336
2b
d2pvsb1
B:-2-336
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lipase_2pvsB01 (B:-2-335)
1b: PFAM_Lipase_2pvsB02 (B:-2-335)
2a: PFAM_PLAT_2pvsB03 (B:340-448)
2b: PFAM_PLAT_2pvsB04 (B:340-448)
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Clan
:
AB_hydrolase
(347)
Family
:
Lipase
(7)
Homo sapiens (Human)
(6)
1a
Lipase-2pvsB01
B:-2-335
1b
Lipase-2pvsB02
B:-2-335
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Homo sapiens (Human)
(7)
2a
PLAT-2pvsB03
B:340-448
2b
PLAT-2pvsB04
B:340-448
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Asymmetric Unit 1
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Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (73 KB)
Header - Biol.Unit 2
Biol.Unit 3 (548 KB)
Header - Biol.Unit 3
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