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2PVQ
Biol. Unit 1
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Asym.Unit (76 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OCHROBACTRUM ANTHROPI GLUTATHIONE TRANSFERASE CYS10ALA MUTANT WITH GLUTATHIONE BOUND AT THE H-SITE
Authors
:
N. Allocati, L. Federici, M. Masulli, B. Favaloro, C. Di Ilio
Date
:
10 May 07 (Deposition) - 15 Jan 08 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Xenobiotics Detoxification, Glutathione, H-Site, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Allocati, L. Federici, M. Masulli, B. Favaloro, C. Di Ilio
Cysteine 10 Is Critical For The Activity Of Ochrobactrum Anthropi Glutathione Transferase And Its Mutation To Alanin Causes The Preferential Binding Of Glutathione To The H-Site.
Proteins V. 71 16 2008
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:61 , ILE A:89 , ARG A:93 , HOH A:5382 , HOH A:5387
BINDING SITE FOR RESIDUE SO4 A 5001
2
AC2
SOFTWARE
LYS A:180 , ARG A:184 , HOH A:5298 , HOH A:5330 , HOH A:5349
BINDING SITE FOR RESIDUE SO4 A 5002
3
AC3
SOFTWARE
VAL A:7 , GLY A:8 , ALA A:9 , ALA A:10 , HIS A:105 , SER A:109 , PHE A:112 , TRP A:164 , HOH A:5238 , HOH A:5295 , HOH A:5307 , HOH A:5316 , HOH A:5331 , HOH A:5347 , HOH A:5369 , HOH A:5380 , HOH A:5391
BINDING SITE FOR RESIDUE GSH A 5204
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:1-81)
2: GST_CTER (A:87-201)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GST_OCHAN
1-81
2
A:1-81
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GST_OCHAN
87-201
2
A:87-201
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2pvqa2 (A:81-201)
2a: SCOP_d2pvqa1 (A:1-80)
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Protein Domains
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)
Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class beta GST
(8)
Ochrobactrum anthropi [TaxId: 529]
(2)
1a
d2pvqa2
A:81-201
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class beta GST
(8)
Ochrobactrum anthropi [TaxId: 529]
(2)
2a
d2pvqa1
A:1-80
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2pvqA01 (A:1-82,A:189-201)
2a: CATH_2pvqA02 (A:83-188)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Ochrobactrum anthropi. Organism_taxid: 529.
(2)
1a
2pvqA01
A:1-82,A:189-201
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Ochrobactrum anthropi. Organism_taxid: 529.
(2)
2a
2pvqA02
A:83-188
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_GST_C_2pvqA01 (A:100-189)
2a: PFAM_GST_N_2_2pvqA02 (A:9-76)
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Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Ochrobactrum anthropi
(2)
1a
GST_C-2pvqA01
A:100-189
Clan
:
Thioredoxin
(367)
Family
:
GST_N_2
(10)
Ochrobactrum anthropi
(2)
2a
GST_N_2-2pvqA02
A:9-76
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