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2PUY
Asym. Unit
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Asym.Unit (29 KB)
Biol.Unit 1 (25 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BHC80 PHD FINGER
Authors
:
J. R. Horton, X. Cheng, R. E. Collins
Date
:
09 May 07 (Deposition) - 14 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.43
Chains
:
Asym. Unit : A,B,E
Biol. Unit 1: A,B,E (1x)
Keywords
:
Phd Finger, Histone Code, Braf-Hdac Complex, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Lan, R. E. Collins, R. De Cegli, R. Alpatov, J. R. Horton, X. Shi, O. Gozani, X. Cheng, Y. Shi
Recognition Of Unmethylated Histone H3 Lysine 4 Links Bhc80 To Lsd1-Mediated Gene Repression.
Nature V. 448 718 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
4
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:491 , CYS A:494 , HIS A:511 , CYS A:514
BINDING SITE FOR RESIDUE ZN A 355
2
AC2
SOFTWARE
CYS A:503 , CYS A:506 , CYS A:529 , CYS A:532
BINDING SITE FOR RESIDUE ZN A 356
3
AC3
SOFTWARE
CYS B:491 , CYS B:494 , HIS B:511 , CYS B:514
BINDING SITE FOR RESIDUE ZN B 357
4
AC4
SOFTWARE
CYS B:503 , CYS B:506 , CYS B:529 , CYS B:532
BINDING SITE FOR RESIDUE ZN B 358
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_2 (A:488-535,B:488-535)
2: ZF_PHD_1 (A:491-532,B:491-532)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
PF21A_HUMAN
488-535
2
A:488-535
B:488-535
2
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
PF21A_HUMAN
491-532
2
A:491-532
B:491-532
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2puya_ (A:)
1b: SCOP_d2puyb_ (B:)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2puya_
A:
1b
d2puyb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2puyB00 (B:484-543)
1b: CATH_2puyA00 (A:485-543)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Herpes Virus-1
(49)
Homologous Superfamily
:
Zinc/RING finger domain, C3HC4 (zinc finger)
(47)
Human (Homo sapiens)
(26)
1a
2puyB00
B:484-543
1b
2puyA00
A:485-543
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PHD_2puyB01 (B:490-535)
1b: PFAM_PHD_2puyB02 (B:490-535)
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Clans
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Clan
:
zf-FYVE-PHD
(57)
Family
:
PHD
(44)
Homo sapiens (Human)
(33)
1a
PHD-2puyB01
B:490-535
1b
PHD-2puyB02
B:490-535
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