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2PTK
Asym. Unit
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Asym.Unit (81 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
CHICKEN SRC TYROSINE KINASE
Authors
:
J. C. Williams, R. Wierenga
Date
:
17 Jun 97 (Deposition) - 24 Dec 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tyrosine-Protein Kinase, Src, Sh2, Sh3
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Williams, A. Weijland, S. Gonfloni, A. Thompson, S. A. Courtneidge, G. Superti-Furga, R. K. Wierenga
The 2. 35 A Crystal Structure Of The Inactivated Form Of Chicken Src: A Dynamic Molecule With Multiple Regulatory Interactions
J. Mol. Biol. V. 274 757 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: O-PHOSPHOTYROSINE (PTRa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PTR
1
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
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]
Sites
(2, 2)
Info
All Sites
1: S1 (UNKNOWN)
2: S2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
S1
UNKNOWN
LYS A:295
ACTIVE SITE.
2
S2
UNKNOWN
GLU A:310
ACTIVE SITE.
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:148-245)
2: PROTEIN_KINASE_ATP (A:273-295)
3: PROTEIN_KINASE_TYR (A:382-394)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
SRC_CHICK
148-245
1
A:148-245
2
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
SRC_CHICK
273-295
1
A:273-295
3
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
SRC_CHICK
382-394
1
A:382-394
[
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]
Exons
(10, 10)
Info
All Exons
Exon 1.2 (A:83-114)
Exon 1.3 (A:114-147)
Exon 1.4 (A:147-182)
Exon 1.5 (A:182-232)
Exon 1.6 (A:232-284)
Exon 1.7 (A:284-344 (gaps))
Exon 1.8 (A:344-369)
Exon 1.9 (A:370-407)
Exon 1.10 (A:424-465)
Exon 1.11b (A:465-528)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11b
11: Boundary 1.11b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000006127
1
ENSGALE00000040081
chr20:
5036245-5036485
241
SRC_CHICK
1-81
81
0
-
-
1.2
ENSGALT00000006127
2
ENSGALE00000040077
chr20:
5036656-5036755
100
SRC_CHICK
81-114
34
1
A:83-114
32
1.3
ENSGALT00000006127
3
ENSGALE00000040071
chr20:
5039208-5039306
99
SRC_CHICK
114-147
34
1
A:114-147
34
1.4
ENSGALT00000006127
4
ENSGALE00000040076
chr20:
5039773-5039876
104
SRC_CHICK
147-182
36
1
A:147-182
36
1.5
ENSGALT00000006127
5
ENSGALE00000040075
chr20:
5040899-5041048
150
SRC_CHICK
182-232
51
1
A:182-232
51
1.6
ENSGALT00000006127
6
ENSGALE00000040079
chr20:
5041450-5041605
156
SRC_CHICK
232-284
53
1
A:232-284
53
1.7
ENSGALT00000006127
7
ENSGALE00000040078
chr20:
5041714-5041893
180
SRC_CHICK
284-344
61
1
A:284-344 (gaps)
61
1.8
ENSGALT00000006127
8
ENSGALE00000040074
chr20:
5041971-5042047
77
SRC_CHICK
344-369
26
1
A:344-369
26
1.9
ENSGALT00000006127
9
ENSGALE00000040080
chr20:
5042182-5042335
154
SRC_CHICK
370-421
52
1
A:370-407
38
1.10
ENSGALT00000006127
10
ENSGALE00000040072
chr20:
5042454-5042585
132
SRC_CHICK
421-465
45
1
A:424-465
42
1.11b
ENSGALT00000006127
11b
ENSGALE00000040073
chr20:
5042664-5042872
209
SRC_CHICK
465-533
69
1
A:465-528
64
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2ptka1 (A:83-145)
2a: SCOP_d2ptka3 (A:249-528)
3a: SCOP_d2ptka2 (A:146-248)
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(
)
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)
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)
(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
c-src protein tyrosine kinase
(17)
Chicken (Gallus gallus) [TaxId: 9031]
(9)
1a
d2ptka1
A:83-145
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
c-src tyrosine kinase
(46)
Chicken (Gallus gallus) [TaxId: 9031]
(34)
2a
d2ptka3
A:249-528
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
c-src tyrosine kinase
(62)
Chicken (Gallus gallus) [TaxId: 9031]
(4)
3a
d2ptka2
A:146-248
[
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]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_2ptkA03 (A:259-344)
2a: CATH_2ptkA02 (A:146-247)
3a: CATH_2ptkA04 (A:345-519)
4a: CATH_2ptkA01 (A:83-145)
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Chicken (Gallus gallus)
(24)
1a
2ptkA03
A:259-344
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Chicken (Gallus gallus)
(4)
2a
2ptkA02
A:146-247
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Chicken (Gallus gallus)
(24)
3a
2ptkA04
A:345-519
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Chicken (Gallus gallus)
(32)
4a
2ptkA01
A:83-145
[
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]
Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_2ptkA01 (A:267-516)
2a: PFAM_SH3_1_2ptkA02 (A:87-134)
3a: PFAM_SH2_2ptkA03 (A:148-230)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Gallus gallus (Chicken)
(9)
1a
Pkinase_Tyr-2ptkA01
A:267-516
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Gallus gallus (Chicken)
(10)
2a
SH3_1-2ptkA02
A:87-134
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Gallus gallus (Chicken)
(2)
3a
SH2-2ptkA03
A:148-230
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Chain A
Asymmetric Unit 1
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