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2PSR
Asym. Unit
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Asym.Unit (23 KB)
Biol.Unit 1 (37 KB)
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(1)
Title
:
HUMAN PSORIASIN (S100A7) CA2+ AND ZN2+ BOUND FORM (CRYSTAL FORM II)
Authors
:
D. E. Brodersen, J. Nyborg, M. Kjeldgaard
Date
:
17 Sep 98 (Deposition) - 15 Jun 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Ca-Binding, Zn-Binding, Psoriasis, S100 Protein Family, Ef-Hand Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. E. Brodersen, J. Nyborg, M. Kjeldgaard
Zinc-Binding Site Of An S100 Protein Revealed. Two Crystal Structures Of Ca2+-Bound Human Psoriasin (S100A7) In The Zn2+-Loaded And Zn2+-Free States.
Biochemistry V. 38 1695 1999
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ZINC ION (ZNa)
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Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: CAA (UNKNOWN)
4: ZNA (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:62 , ASN A:64 , ASP A:66 , LYS A:68 , GLU A:73 , HOH A:306
BINDING SITE FOR RESIDUE CA A 102
2
AC2
SOFTWARE
HIS A:17 , ASP A:24 , HIS A:86 , HIS A:90
BINDING SITE FOR RESIDUE ZN A 103
3
CAA
UNKNOWN
ASP A:62 , ASN A:64 , ASP A:66 , LYS A:68 , GLU A:73
REGULATORY CA2+ BINDING SITE
4
ZNA
UNKNOWN
HIS A:17 , ASP A:24 , HIS A:86 , HIS A:90
ZN2+ BINDING SITE
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_039118 (D27D, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_039118
E
28
D
S10A7_HUMAN
Polymorphism
3014837
A
D
27
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:49-84)
2: S100_CABP (A:57-78)
3: EF_HAND_1 (A:62-74)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S10A7_HUMAN
50-85
1
A:49-84
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S10A7_HUMAN
58-79
1
A:57-78
3
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
S10A7_HUMAN
63-75
1
A:62-74
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Exons
(2, 2)
Info
All Exons
Exon 1.3 (A:1-46)
Exon 1.4 (A:47-96)
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All Exon Boundaries
1: Boundary 1.1/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368723
1
ENSE00001447846
chr1:
153433177-153433084
94
S10A7_HUMAN
-
0
0
-
-
1.3
ENST00000368723
3
ENSE00001604429
chr1:
153431506-153431349
158
S10A7_HUMAN
1-47
47
1
A:1-46
46
1.4
ENST00000368723
4
ENSE00001447844
chr1:
153430446-153430220
227
S10A7_HUMAN
48-101
54
1
A:47-96
50
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2psra_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]
(3)
1a
d2psra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2psrA00 (A:1-96)
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Organisms
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)
(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
2psrA00
A:1-96
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_S_100_2psrA01 (A:5-45)
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Clans
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Clan
:
EF_hand
(270)
Family
:
S_100
(63)
Homo sapiens (Human)
(41)
1a
S_100-2psrA01
A:5-45
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