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2PSA
Theor. Model
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Theoretical Model (71 KB)
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(1)
Title
:
KNOWLEDGE BASED MODEL OF PROSTATE SPECIFIC ANTIGEN (THEORETICAL MODEL) BOUND TO A CONSENSUS PEPTIDE SUBSTRATE
Authors
:
J. L. Pellequer
Date
:
11 Mar 99 (Deposition) - 16 Mar 99 (Release) - 16 Mar 99 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,I
Keywords
:
Kallikrein, Serine Protease, Psa, Substrate Phage Display
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Coombs, R. C. Bergstrom, J. L. Pellequer, S. I. Baker, M. Navre, M. M. Smith, J. A. Tainer, E. L. Madison, D. R. Corey
Substrate Specificity Of Prostate-Specific Antigen (Psa).
Chem. Biol. V. 5 475 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
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Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(1, 1)
Info
All Sites
1: CAT (not defined)
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Label:
No.
Name
Evidence
Residues
Description
1
CAT
not defined
HIS A:57 , ASP A:102 , SER A:195
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021941 (E23K, chain A, )
2: VAR_021942 (L114I, chain A, )
3: VAR_051852 (I163T, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021941
E
32
K
KLK3_HUMAN
Polymorphism
2271092
A
E
23
K
2
UniProt
VAR_021942
L
132
I
KLK3_HUMAN
Polymorphism
2003783
A
L
114
I
3
UniProt
VAR_051852
I
179
T
KLK3_HUMAN
Polymorphism
17632542
A
I
163
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243)
2: TRYPSIN_HIS (A:53-58)
3: TRYPSIN_SER (A:189-200)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
KLK3_HUMAN
25-258
1
A:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
KLK3_HUMAN
61-66
1
A:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
KLK3_HUMAN
207-218
1
A:189-200
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Exons
(4, 4)
Info
All Exons
Exon 1.2a (A:16-61 (gaps))
Exon 1.3b (A:61-149 (gaps))
Exon 1.4 (A:149-192)
Exon 1.5b (A:193-246 (gaps))
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All Exon Boundaries
1: Boundary 1.1/1.2a
2: Boundary 1.2a/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000326003
1
ENSE00001123926
chr19:
51358171-51358257
87
KLK3_HUMAN
1-16
16
0
-
-
1.2a
ENST00000326003
2a
ENSE00001718125
chr19:
51359496-51359655
160
KLK3_HUMAN
16-69
54
1
A:16-61 (gaps)
46
1.3b
ENST00000326003
3b
ENSE00001268279
chr19:
51361285-51361571
287
KLK3_HUMAN
69-165
97
1
A:61-149 (gaps)
101
1.4
ENST00000326003
4
ENSE00001268316
chr19:
51361715-51361851
137
KLK3_HUMAN
165-210
46
1
A:149-192
46
1.5b
ENST00000326003
5b
ENSE00001268296
chr19:
51363228-51364020
793
KLK3_HUMAN
211-261
51
1
A:193-246 (gaps)
55
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
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