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2PQ9
Asym. Unit
Info
Asym.Unit (81 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
E. COLI EPSPS LIGANDED WITH (R)-DIFLUOROMETHYL TETRAHEDRAL REACTION INTERMEDIATE ANALOG
Authors
:
M. L. Healy-Fried, T. Funke, H. Han, E. Schonbrunn
Date
:
01 May 07 (Deposition) - 11 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Inside-Out Alpha/Beta Barrel, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Funke, M. L. Healy-Fried, H. Han, D. G. Alberg, P. A. Bartlett, E. Schonbrunn
Differential Inhibition Of Class I And Class Ii 5-Enolpyruvylshikimate-3-Phosphate Synthases By Tetrahedral Reaction Intermediate Analogues.
Biochemistry V. 46 13344 2007
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Hetero Components
(2, 15)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
1f: FORMIC ACID (FMTf)
1g: FORMIC ACID (FMTg)
1h: FORMIC ACID (FMTh)
1i: FORMIC ACID (FMTi)
1j: FORMIC ACID (FMTj)
1k: FORMIC ACID (FMTk)
1l: FORMIC ACID (FMTl)
1m: FORMIC ACID (FMTm)
1n: FORMIC ACID (FMTn)
2a: (3R,4S,5R)-5-[(1R)-1-CARBOXY-2,2-D... (GG9a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMT
14
Ligand/Ion
FORMIC ACID
2
GG9
1
Ligand/Ion
(3R,4S,5R)-5-[(1R)-1-CARBOXY-2,2-DIFLUORO-1-(PHOSPHONOOXY)ETHOXY]-4-HYDROXY-3-(PHOSPHONOOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:22 , SER A:23 , ARG A:27 , ASN A:94 , GLY A:96 , THR A:97 , ARG A:124 , SER A:169 , SER A:170 , GLN A:171 , SER A:197 , TYR A:200 , ASP A:313 , ASN A:336 , LYS A:340 , ARG A:344 , HIS A:385 , ARG A:386 , LYS A:411 , HOH A:525 , HOH A:534 , HOH A:550 , HOH A:646
BINDING SITE FOR RESIDUE GG9 A 501
02
AC2
SOFTWARE
LYS A:373 , LEU A:374 , SER A:397 , ASP A:398 , HOH A:603 , HOH A:730 , HOH A:838
BINDING SITE FOR RESIDUE FMT A 502
03
AC3
SOFTWARE
ALA A:380 , TYR A:382 , HOH A:584 , HOH A:735 , HOH A:834
BINDING SITE FOR RESIDUE FMT A 503
04
AC4
SOFTWARE
THR A:5 , ARG A:152 , THR A:402
BINDING SITE FOR RESIDUE FMT A 504
05
AC5
SOFTWARE
THR A:58 , SER A:63 , TYR A:64 , HOH A:627 , HOH A:887
BINDING SITE FOR RESIDUE FMT A 505
06
AC6
SOFTWARE
ARG A:298 , LEU A:301 , HOH A:869
BINDING SITE FOR RESIDUE FMT A 506
07
AC7
SOFTWARE
THR A:65 , LEU A:66 , SER A:67 , ARG A:72 , HOH A:786 , HOH A:913
BINDING SITE FOR RESIDUE FMT A 507
08
AC8
SOFTWARE
ASP A:13 , GLY A:14 , THR A:259 , HOH A:954
BINDING SITE FOR RESIDUE FMT A 508
09
AC9
SOFTWARE
PRO A:199 , HOH A:561
BINDING SITE FOR RESIDUE FMT A 509
10
BC1
SOFTWARE
LYS A:38 , TYR A:335 , HIS A:363 , HOH A:848
BINDING SITE FOR RESIDUE FMT A 510
11
BC2
SOFTWARE
ARG A:134 , LEU A:135 , HOH A:695 , HOH A:910
BINDING SITE FOR RESIDUE FMT A 511
12
BC3
SOFTWARE
PRO A:19 , PHE A:413 , PRO A:414 , ASP A:415 , HOH A:635 , HOH A:645 , HOH A:732
BINDING SITE FOR RESIDUE FMT A 512
13
BC4
SOFTWARE
THR A:263 , GLY A:264 , HOH A:549
BINDING SITE FOR RESIDUE FMT A 513
14
BC5
SOFTWARE
GLU A:358 , GLU A:360 , ARG A:367 , THR A:369 , HOH A:654
BINDING SITE FOR RESIDUE FMT A 514
15
BC6
SOFTWARE
HIS A:52 , ASN A:94 , GLU A:118 , HOH A:558 , HOH A:847
BINDING SITE FOR RESIDUE FMT A 515
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EPSP_SYNTHASE_1 (A:90-104)
2: EPSP_SYNTHASE_2 (A:338-356)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPSP_SYNTHASE_1
PS00104
EPSP synthase signature 1.
AROA_ECOLI
90-104
1
A:90-104
2
EPSP_SYNTHASE_2
PS00885
EPSP synthase signature 2.
AROA_ECOLI
338-356
1
A:338-356
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pq9a_ (A:)
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(
)
(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase
(26)
Escherichia coli [TaxId: 562]
(16)
1a
d2pq9a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2pq9A01 (A:1-18,A:241-427)
1b: CATH_2pq9A02 (A:20-223)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(5)
1a
2pq9A01
A:1-18,A:241-427
1b
2pq9A02
A:20-223
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_EPSP_synthase_2pq9A01 (A:6-420)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EPT_RTPC
(43)
Family
:
EPSP_synthase
(40)
Escherichia coli (strain K12)
(14)
1a
EPSP_synthase-2pq9A01
A:6-420
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Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (81 KB)
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