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2PPL
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (153 KB)
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(1)
Title
:
HUMAN PANCREATIC LIPASE-RELATED PROTEIN 1
Authors
:
J. R. Walker, T. Davis, A. Seitova, C. Butler-Cole, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe- Paganon, Structural Genomics Consortium (Sgc)
Date
:
30 Apr 07 (Deposition) - 05 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Lipid Degradation, Pancreatic Lipase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, T. Davis, A. Seitova, C. Butler-Cole, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Structure Of The Human Pancreatic Lipase-Related Protein 1.
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
NA
3
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:205 , ARG A:208 , ASP A:210 , ASP A:213 , HOH A:538 , HOH A:581
BINDING SITE FOR RESIDUE CA A 478
2
AC2
SOFTWARE
GLU A:79 , SER A:81 , HOH A:486 , HOH A:603 , HOH A:698 , HOH A:699
BINDING SITE FOR RESIDUE NA A 479
3
AC3
SOFTWARE
GLU A:197 , ALA A:225 , LEU A:227 , GLY A:232 , GLY A:234 , HOH A:589
BINDING SITE FOR RESIDUE NA A 480
4
AC4
SOFTWARE
ASN A:421 , ASN A:422 , GLU A:458 , HOH A:659 , HOH A:660 , HOH A:663
BINDING SITE FOR RESIDUE CA A 481
5
AC5
SOFTWARE
ASN A:422 , VAL A:424 , ASN A:426 , GLU A:458 , HOH A:607
BINDING SITE FOR RESIDUE CA A 482
6
AC6
SOFTWARE
LYS A:183 , HOH A:557 , HOH A:569 , HOH A:627
BINDING SITE FOR RESIDUE NA A 483
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049820 (N61D, chain A, )
2: VAR_036379 (S129C, chain A, )
3: VAR_022082 (A271V, chain A, )
4: VAR_022659 (D414D, chain A, )
5: VAR_014915 (L461P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049820
N
61
D
LIPR1_HUMAN
Polymorphism
11197744
A
N
61
D
2
UniProt
VAR_036379
S
129
C
LIPR1_HUMAN
Unclassified
---
A
S
129
C
3
UniProt
VAR_022082
A
271
V
LIPR1_HUMAN
Polymorphism
2305205
A
A
271
V
4
UniProt
VAR_022659
E
414
D
LIPR1_HUMAN
Polymorphism
2305204
A
D
414
D
5
UniProt
VAR_014915
L
461
P
LIPR1_HUMAN
Polymorphism
1049125
A
L
461
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:165-174)
2: PLAT (A:356-467)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPR1_HUMAN
165-174
1
A:165-174
2
PLAT
PS50095
PLAT domain profile.
LIPR1_HUMAN
356-467
1
A:356-467
[
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]
Exons
(12, 12)
Info
All Exons
Exon 1.3d (A:17-17)
Exon 1.4a (A:17-68)
Exon 1.5a (A:69-110)
Exon 1.7i (A:111-155)
Exon 1.7m (A:156-192)
Exon 1.8b (A:192-232)
Exon 1.9c (A:232-272)
Exon 1.10a (A:272-311)
Exon 1.11 (A:312-355 (gaps))
Exon 1.12 (A:355-391)
Exon 1.13 (A:391-447)
Exon 1.14d (A:447-467)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2c/1.3d
02: Boundary 1.3d/1.4a
03: Boundary 1.4a/1.5a
04: Boundary 1.5a/1.7i
05: Boundary 1.7i/1.7m
06: Boundary 1.7m/1.8b
07: Boundary 1.8b/1.9c
08: Boundary 1.9c/1.10a
09: Boundary 1.10a/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14d
13: Boundary 1.14d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000358834
2c
ENSE00001838355
chr10:
118350474-118350507
34
LIPR1_HUMAN
-
0
0
-
-
1.3d
ENST00000358834
3d
ENSE00002187879
chr10:
118350642-118350690
49
LIPR1_HUMAN
1-17
17
1
A:17-17
1
1.4a
ENST00000358834
4a
ENSE00001097302
chr10:
118351283-118351437
155
LIPR1_HUMAN
17-68
52
1
A:17-68
52
1.5a
ENST00000358834
5a
ENSE00001097318
chr10:
118351928-118352053
126
LIPR1_HUMAN
69-110
42
1
A:69-110
42
1.7i
ENST00000358834
7i
ENSE00001097300
chr10:
118354242-118354376
135
LIPR1_HUMAN
111-155
45
1
A:111-155
45
1.7m
ENST00000358834
7m
ENSE00002199437
chr10:
118355726-118355834
109
LIPR1_HUMAN
156-192
37
1
A:156-192
37
1.8b
ENST00000358834
8b
ENSE00001097315
chr10:
118357340-118357459
120
LIPR1_HUMAN
192-232
41
1
A:192-232
41
1.9c
ENST00000358834
9c
ENSE00001097297
chr10:
118357559-118357678
120
LIPR1_HUMAN
232-272
41
1
A:232-272
41
1.10a
ENST00000358834
10a
ENSE00001097310
chr10:
118359559-118359677
119
LIPR1_HUMAN
272-311
40
1
A:272-311
40
1.11
ENST00000358834
11
ENSE00001097320
chr10:
118360584-118360713
130
LIPR1_HUMAN
312-355
44
1
A:312-355 (gaps)
44
1.12
ENST00000358834
12
ENSE00001097309
chr10:
118363542-118363650
109
LIPR1_HUMAN
355-391
37
1
A:355-391
37
1.13
ENST00000358834
13
ENSE00001097317
chr10:
118364898-118365065
168
LIPR1_HUMAN
391-447
57
1
A:391-447
57
1.14d
ENST00000358834
14d
ENSE00001822699
chr10:
118368565-118368687
123
LIPR1_HUMAN
447-467
21
1
A:447-467
21
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ppla2 (A:355-468)
2a: SCOP_d2ppla1 (A:17-354)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2ppla2
A:355-468
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2ppla1
A:17-354
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Lipase_2pplA01 (A:18-353)
2a: PFAM_PLAT_2pplA02 (A:358-465)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Lipase
(7)
Homo sapiens (Human)
(6)
1a
Lipase-2pplA01
A:18-353
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Homo sapiens (Human)
(7)
2a
PLAT-2pplA02
A:358-465
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]
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Chain A
Asymmetric Unit 1
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