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2PNK
Biol. Unit 1
Info
Asym.Unit (946 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (231 KB)
Biol.Unit 3 (243 KB)
Biol.Unit 4 (247 KB)
Biol.Unit 5 (475 KB)
Biol.Unit 6 (458 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN URONATE ISOMERASE (BH0493) FROM BACILLUS HALODURANS C-125 AT 2.00 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
24 Apr 07 (Deposition) - 08 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: A,B,C,J,K,L (1x)
Biol. Unit 6: D,E,F,G,H,I (1x)
Keywords
:
Uronate Isomerase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Protein (Np_241359. 1) From Bacillus Halodurans At 2. 00 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(6, 62)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
3g: FORMIC ACID (FMTg)
3h: FORMIC ACID (FMTh)
3i: FORMIC ACID (FMTi)
3j: FORMIC ACID (FMTj)
3k: FORMIC ACID (FMTk)
3l: FORMIC ACID (FMTl)
3m: FORMIC ACID (FMTm)
3n: FORMIC ACID (FMTn)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
4v: GLYCEROL (GOLv)
4w: GLYCEROL (GOLw)
4x: GLYCEROL (GOLx)
5a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
5c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
5d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
5e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
5f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
6a: SELENOMETHIONINE (MSEa)
6aa: SELENOMETHIONINE (MSEaa)
6ab: SELENOMETHIONINE (MSEab)
6ac: SELENOMETHIONINE (MSEac)
6ad: SELENOMETHIONINE (MSEad)
6ae: SELENOMETHIONINE (MSEae)
6af: SELENOMETHIONINE (MSEaf)
6ag: SELENOMETHIONINE (MSEag)
6ah: SELENOMETHIONINE (MSEah)
6ai: SELENOMETHIONINE (MSEai)
6aj: SELENOMETHIONINE (MSEaj)
6ak: SELENOMETHIONINE (MSEak)
6al: SELENOMETHIONINE (MSEal)
6am: SELENOMETHIONINE (MSEam)
6an: SELENOMETHIONINE (MSEan)
6ao: SELENOMETHIONINE (MSEao)
6ap: SELENOMETHIONINE (MSEap)
6aq: SELENOMETHIONINE (MSEaq)
6ar: SELENOMETHIONINE (MSEar)
6as: SELENOMETHIONINE (MSEas)
6at: SELENOMETHIONINE (MSEat)
6au: SELENOMETHIONINE (MSEau)
6av: SELENOMETHIONINE (MSEav)
6aw: SELENOMETHIONINE (MSEaw)
6ax: SELENOMETHIONINE (MSEax)
6ay: SELENOMETHIONINE (MSEay)
6az: SELENOMETHIONINE (MSEaz)
6b: SELENOMETHIONINE (MSEb)
6ba: SELENOMETHIONINE (MSEba)
6bb: SELENOMETHIONINE (MSEbb)
6bc: SELENOMETHIONINE (MSEbc)
6bd: SELENOMETHIONINE (MSEbd)
6be: SELENOMETHIONINE (MSEbe)
6bf: SELENOMETHIONINE (MSEbf)
6bg: SELENOMETHIONINE (MSEbg)
6bh: SELENOMETHIONINE (MSEbh)
6bi: SELENOMETHIONINE (MSEbi)
6bj: SELENOMETHIONINE (MSEbj)
6bk: SELENOMETHIONINE (MSEbk)
6bl: SELENOMETHIONINE (MSEbl)
6bm: SELENOMETHIONINE (MSEbm)
6bn: SELENOMETHIONINE (MSEbn)
6bo: SELENOMETHIONINE (MSEbo)
6bp: SELENOMETHIONINE (MSEbp)
6bq: SELENOMETHIONINE (MSEbq)
6br: SELENOMETHIONINE (MSEbr)
6bs: SELENOMETHIONINE (MSEbs)
6bt: SELENOMETHIONINE (MSEbt)
6bu: SELENOMETHIONINE (MSEbu)
6bv: SELENOMETHIONINE (MSEbv)
6bw: SELENOMETHIONINE (MSEbw)
6bx: SELENOMETHIONINE (MSEbx)
6by: SELENOMETHIONINE (MSEby)
6bz: SELENOMETHIONINE (MSEbz)
6c: SELENOMETHIONINE (MSEc)
6ca: SELENOMETHIONINE (MSEca)
6cb: SELENOMETHIONINE (MSEcb)
6cc: SELENOMETHIONINE (MSEcc)
6cd: SELENOMETHIONINE (MSEcd)
6ce: SELENOMETHIONINE (MSEce)
6cf: SELENOMETHIONINE (MSEcf)
6cg: SELENOMETHIONINE (MSEcg)
6ch: SELENOMETHIONINE (MSEch)
6ci: SELENOMETHIONINE (MSEci)
6cj: SELENOMETHIONINE (MSEcj)
6ck: SELENOMETHIONINE (MSEck)
6cl: SELENOMETHIONINE (MSEcl)
6cm: SELENOMETHIONINE (MSEcm)
6cn: SELENOMETHIONINE (MSEcn)
6co: SELENOMETHIONINE (MSEco)
6cp: SELENOMETHIONINE (MSEcp)
6cq: SELENOMETHIONINE (MSEcq)
6cr: SELENOMETHIONINE (MSEcr)
6cs: SELENOMETHIONINE (MSEcs)
6ct: SELENOMETHIONINE (MSEct)
6cu: SELENOMETHIONINE (MSEcu)
6cv: SELENOMETHIONINE (MSEcv)
6cw: SELENOMETHIONINE (MSEcw)
6cx: SELENOMETHIONINE (MSEcx)
6cy: SELENOMETHIONINE (MSEcy)
6cz: SELENOMETHIONINE (MSEcz)
6d: SELENOMETHIONINE (MSEd)
6da: SELENOMETHIONINE (MSEda)
6db: SELENOMETHIONINE (MSEdb)
6dc: SELENOMETHIONINE (MSEdc)
6dd: SELENOMETHIONINE (MSEdd)
6de: SELENOMETHIONINE (MSEde)
6df: SELENOMETHIONINE (MSEdf)
6dg: SELENOMETHIONINE (MSEdg)
6dh: SELENOMETHIONINE (MSEdh)
6di: SELENOMETHIONINE (MSEdi)
6dj: SELENOMETHIONINE (MSEdj)
6dk: SELENOMETHIONINE (MSEdk)
6dl: SELENOMETHIONINE (MSEdl)
6dm: SELENOMETHIONINE (MSEdm)
6dn: SELENOMETHIONINE (MSEdn)
6do: SELENOMETHIONINE (MSEdo)
6dp: SELENOMETHIONINE (MSEdp)
6dq: SELENOMETHIONINE (MSEdq)
6dr: SELENOMETHIONINE (MSEdr)
6ds: SELENOMETHIONINE (MSEds)
6dt: SELENOMETHIONINE (MSEdt)
6du: SELENOMETHIONINE (MSEdu)
6dv: SELENOMETHIONINE (MSEdv)
6dw: SELENOMETHIONINE (MSEdw)
6dx: SELENOMETHIONINE (MSEdx)
6dy: SELENOMETHIONINE (MSEdy)
6dz: SELENOMETHIONINE (MSEdz)
6e: SELENOMETHIONINE (MSEe)
6ea: SELENOMETHIONINE (MSEea)
6eb: SELENOMETHIONINE (MSEeb)
6ec: SELENOMETHIONINE (MSEec)
6ed: SELENOMETHIONINE (MSEed)
6ee: SELENOMETHIONINE (MSEee)
6ef: SELENOMETHIONINE (MSEef)
6eg: SELENOMETHIONINE (MSEeg)
6eh: SELENOMETHIONINE (MSEeh)
6ei: SELENOMETHIONINE (MSEei)
6ej: SELENOMETHIONINE (MSEej)
6ek: SELENOMETHIONINE (MSEek)
6el: SELENOMETHIONINE (MSEel)
6em: SELENOMETHIONINE (MSEem)
6en: SELENOMETHIONINE (MSEen)
6eo: SELENOMETHIONINE (MSEeo)
6ep: SELENOMETHIONINE (MSEep)
6eq: SELENOMETHIONINE (MSEeq)
6er: SELENOMETHIONINE (MSEer)
6es: SELENOMETHIONINE (MSEes)
6et: SELENOMETHIONINE (MSEet)
6eu: SELENOMETHIONINE (MSEeu)
6ev: SELENOMETHIONINE (MSEev)
6ew: SELENOMETHIONINE (MSEew)
6ex: SELENOMETHIONINE (MSEex)
6ey: SELENOMETHIONINE (MSEey)
6ez: SELENOMETHIONINE (MSEez)
6f: SELENOMETHIONINE (MSEf)
6fa: SELENOMETHIONINE (MSEfa)
6fb: SELENOMETHIONINE (MSEfb)
6fc: SELENOMETHIONINE (MSEfc)
6fd: SELENOMETHIONINE (MSEfd)
6fe: SELENOMETHIONINE (MSEfe)
6ff: SELENOMETHIONINE (MSEff)
6fg: SELENOMETHIONINE (MSEfg)
6fh: SELENOMETHIONINE (MSEfh)
6fi: SELENOMETHIONINE (MSEfi)
6fj: SELENOMETHIONINE (MSEfj)
6fk: SELENOMETHIONINE (MSEfk)
6fl: SELENOMETHIONINE (MSEfl)
6fm: SELENOMETHIONINE (MSEfm)
6fn: SELENOMETHIONINE (MSEfn)
6fo: SELENOMETHIONINE (MSEfo)
6fp: SELENOMETHIONINE (MSEfp)
6fq: SELENOMETHIONINE (MSEfq)
6fr: SELENOMETHIONINE (MSEfr)
6fs: SELENOMETHIONINE (MSEfs)
6ft: SELENOMETHIONINE (MSEft)
6fu: SELENOMETHIONINE (MSEfu)
6fv: SELENOMETHIONINE (MSEfv)
6fw: SELENOMETHIONINE (MSEfw)
6fx: SELENOMETHIONINE (MSEfx)
6fy: SELENOMETHIONINE (MSEfy)
6fz: SELENOMETHIONINE (MSEfz)
6g: SELENOMETHIONINE (MSEg)
6ga: SELENOMETHIONINE (MSEga)
6gb: SELENOMETHIONINE (MSEgb)
6gc: SELENOMETHIONINE (MSEgc)
6gd: SELENOMETHIONINE (MSEgd)
6ge: SELENOMETHIONINE (MSEge)
6gf: SELENOMETHIONINE (MSEgf)
6gg: SELENOMETHIONINE (MSEgg)
6gh: SELENOMETHIONINE (MSEgh)
6gi: SELENOMETHIONINE (MSEgi)
6gj: SELENOMETHIONINE (MSEgj)
6gk: SELENOMETHIONINE (MSEgk)
6gl: SELENOMETHIONINE (MSEgl)
6gm: SELENOMETHIONINE (MSEgm)
6gn: SELENOMETHIONINE (MSEgn)
6go: SELENOMETHIONINE (MSEgo)
6gp: SELENOMETHIONINE (MSEgp)
6gq: SELENOMETHIONINE (MSEgq)
6gr: SELENOMETHIONINE (MSEgr)
6h: SELENOMETHIONINE (MSEh)
6i: SELENOMETHIONINE (MSEi)
6j: SELENOMETHIONINE (MSEj)
6k: SELENOMETHIONINE (MSEk)
6l: SELENOMETHIONINE (MSEl)
6m: SELENOMETHIONINE (MSEm)
6n: SELENOMETHIONINE (MSEn)
6o: SELENOMETHIONINE (MSEo)
6p: SELENOMETHIONINE (MSEp)
6q: SELENOMETHIONINE (MSEq)
6r: SELENOMETHIONINE (MSEr)
6s: SELENOMETHIONINE (MSEs)
6t: SELENOMETHIONINE (MSEt)
6u: SELENOMETHIONINE (MSEu)
6v: SELENOMETHIONINE (MSEv)
6w: SELENOMETHIONINE (MSEw)
6x: SELENOMETHIONINE (MSEx)
6y: SELENOMETHIONINE (MSEy)
6z: SELENOMETHIONINE (MSEz)
7a: SODIUM ION (NAa)
7b: SODIUM ION (NAb)
7c: SODIUM ION (NAc)
8a: PHOSPHATE ION (PO4a)
8b: PHOSPHATE ION (PO4b)
8c: PHOSPHATE ION (PO4c)
8d: PHOSPHATE ION (PO4d)
9a: UNKNOWN LIGAND (UNLa)
9b: UNKNOWN LIGAND (UNLb)
9c: UNKNOWN LIGAND (UNLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
FMT
3
Ligand/Ion
FORMIC ACID
4
GOL
5
Ligand/Ion
GLYCEROL
5
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
6
MSE
51
Mod. Amino Acid
SELENOMETHIONINE
7
NA
-1
Ligand/Ion
SODIUM ION
8
PO4
1
Ligand/Ion
PHOSPHATE ION
9
UNL
1
Ligand/Ion
UNKNOWN LIGAND
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC8 (SOFTWARE)
03: BC3 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC6 (SOFTWARE)
08: CC8 (SOFTWARE)
09: DC8 (SOFTWARE)
10: EC7 (SOFTWARE)
11: EC8 (SOFTWARE)
12: FC9 (SOFTWARE)
13: GC1 (SOFTWARE)
14: HC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
HOH A:500 , HOH A:535 , HOH B:502 , HOH B:551 , HOH C:443 , HOH C:465 , HOH C:474
BINDING SITE FOR RESIDUE NA A 428
02
AC8
SOFTWARE
LYS A:278 , GLU A:304 , LYS B:278 , GLU B:304 , LYS C:278 , GLU C:304
BINDING SITE FOR RESIDUE CL A 429
03
BC3
SOFTWARE
HIS C:49 , TYR C:50 , TRP C:326 , ARG C:357 , HOH C:475 , HOH C:574
BINDING SITE FOR RESIDUE PO4 C 428
04
CC1
SOFTWARE
ASN A:197 , GLU A:198 , ASN H:176 , GLU H:177 , TYR H:178 , GLU H:179 , SER H:234 , ASN H:235 , ARG H:236 , HOH H:459 , HOH H:460 , HOH H:461 , HOH H:506 , HOH H:521 , HOH H:581 , HOH H:627
BINDING SITE FOR RESIDUE UNL H 430
05
CC2
SOFTWARE
GLU B:177 , TYR B:178 , GLU B:179 , ASN B:235 , ARG B:236 , HOH B:446 , HOH B:453 , HOH B:463 , HOH B:466 , HOH B:506 , HOH B:521 , HOH B:561 , HOH B:692 , HOH B:720 , ASN G:197 , GLU G:198
BINDING SITE FOR RESIDUE UNL B 428
06
CC4
SOFTWARE
ARG A:314 , LYS A:315 , HIS B:49 , ALA B:53 , PHE B:327
BINDING SITE FOR RESIDUE FMT A 430
07
CC6
SOFTWARE
ARG B:314 , LYS B:315 , HIS C:49 , ALA C:53 , TRP C:326 , PHE C:327
BINDING SITE FOR RESIDUE FMT B 429
08
CC8
SOFTWARE
HIS A:49 , ALA A:53 , TRP A:326 , PHE A:327 , HOH A:595 , ARG C:314 , LYS C:315
BINDING SITE FOR RESIDUE FMT C 429
09
DC8
SOFTWARE
ASN A:176 , GLU A:177 , TYR A:178 , GLU A:179 , GLN A:180 , ASN A:235 , HOH A:506 , HOH A:799
BINDING SITE FOR RESIDUE GOL A 431
10
EC7
SOFTWARE
HIS A:28 , HIS A:49 , TYR A:50 , TRP A:326 , ASP A:355 , ARG A:357 , HOH A:457
BINDING SITE FOR RESIDUE GOL A 432
11
EC8
SOFTWARE
HIS B:49 , TYR B:50 , TRP B:326 , ASP B:355 , ARG B:357 , HOH B:461 , HOH B:608
BINDING SITE FOR RESIDUE GOL B 430
12
FC9
SOFTWARE
ASP A:210 , TRP A:211 , ARG A:214
BINDING SITE FOR RESIDUE GOL A 433
13
GC1
SOFTWARE
PHE A:230 , ASP A:282 , HIS A:286 , ARG A:289 , HOH A:523 , HOH A:689
BINDING SITE FOR RESIDUE GOL A 434
14
HC1
SOFTWARE
PRO C:226 , SER C:280
BINDING SITE FOR RESIDUE MPD C 430
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2pnka1 (A:1-423)
1b: SCOP_d2pnkb_ (B:)
1c: SCOP_d2pnkc_ (C:)
1d: SCOP_d2pnkd_ (D:)
1e: SCOP_d2pnke_ (E:)
1f: SCOP_d2pnkf_ (F:)
1g: SCOP_d2pnkg_ (G:)
1h: SCOP_d2pnkh_ (H:)
1i: SCOP_d2pnki_ (I:)
1j: SCOP_d2pnkj_ (J:)
1k: SCOP_d2pnkk_ (K:)
1l: SCOP_d2pnkl_ (L:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Uronate isomerase-like
(10)
Protein domain
:
Uncharacterized protein BH0493
(9)
Bacillus halodurans [TaxId: 86665]
(9)
1a
d2pnka1
A:1-423
1b
d2pnkb_
B:
1c
d2pnkc_
C:
1d
d2pnkd_
D:
1e
d2pnke_
E:
1f
d2pnkf_
F:
1g
d2pnkg_
G:
1h
d2pnkh_
H:
1i
d2pnki_
I:
1j
d2pnkj_
J:
1k
d2pnkk_
K:
1l
d2pnkl_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2pnkA02 (A:39-120)
1b: CATH_2pnkB02 (B:39-120)
1c: CATH_2pnkC02 (C:39-120)
1d: CATH_2pnkD02 (D:39-120)
1e: CATH_2pnkE02 (E:39-120)
1f: CATH_2pnkF02 (F:39-120)
1g: CATH_2pnkG02 (G:39-120)
1h: CATH_2pnkH02 (H:39-120)
1i: CATH_2pnkI02 (I:39-120)
1j: CATH_2pnkJ02 (J:39-120)
1k: CATH_2pnkK02 (K:39-120)
1l: CATH_2pnkL02 (L:39-120)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
uronate isomerase, domain 2, chain A
(11)
Homologous Superfamily
:
uronate isomerase, domain 2, chain A
(11)
Bacillus halodurans c-125. Organism_taxid: 272558. Strain: c-125, dsm18197, ferm 7344, jcm 9153.
(4)
1a
2pnkA02
A:39-120
1b
2pnkB02
B:39-120
1c
2pnkC02
C:39-120
1d
2pnkD02
D:39-120
1e
2pnkE02
E:39-120
1f
2pnkF02
F:39-120
1g
2pnkG02
G:39-120
1h
2pnkH02
H:39-120
1i
2pnkI02
I:39-120
1j
2pnkJ02
J:39-120
1k
2pnkK02
K:39-120
1l
2pnkL02
L:39-120
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Asymmetric Unit 1
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