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2PNF
Biol. Unit 1
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Asym.Unit (89 KB)
Biol.Unit 1 (166 KB)
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Title
:
STRUCTURE OF AQUIFEX AEOLICUS FABG 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE
Authors
:
Q. Mao, T. C. Umland
Date
:
24 Apr 07 (Deposition) - 01 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Short Chain Oxidoreductase, Rossmann Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
Q. Mao, R. Huether, W. L. Duax, T. C. Umland
Structure Of Aquifex Aeolicus Fabg 3-Oxoacyl-(Acyl-Carrier Protein) Reductase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
2a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
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No.
Name
Count
Type
Full Name
1
1PE
8
Ligand/Ion
PENTAETHYLENE GLYCOL
2
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:4 , LEU A:5 , GLN A:6 , GLY A:7 , LYS A:8 , TRP A:136 , GLU A:231 , HOH A:1190
BINDING SITE FOR RESIDUE 1PE A 401
2
AC2
SOFTWARE
LYS B:4 , GLY B:7 , LYS B:8 , TRP B:136 , GLU B:231 , HOH B:1108
BINDING SITE FOR RESIDUE 1PE B 501
3
AC3
SOFTWARE
GLN B:154 , TYR B:157 , ILE B:190 , THR B:195 , TYR B:206 , PHE B:215 , HOH B:1287
BINDING SITE FOR RESIDUE 1PE B 601
4
AC4
SOFTWARE
GLN A:154 , TYR A:157 , PHE A:189 , ILE A:190 , THR A:195 , TYR A:206 , PHE A:215 , HOH A:1188 , HOH A:1244
BINDING SITE FOR RESIDUE 1PE A 701
5
AC5
SOFTWARE
ASP A:98 , LYS A:99 , ASP A:108 , GLN A:125 , HOH A:1264 , LEU B:102 , ARG B:103 , SER B:105
BINDING SITE FOR RESIDUE MES B 801
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:144-172,B:144-172)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
FABG_AQUAE
144-172
4
A:144-172
B:144-172
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pnfa_ (A:)
1b: SCOP_d2pnfb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Aquifex aeolicus [TaxId: 224324]
(3)
1a
d2pnfa_
A:
1b
d2pnfb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2pnfA00 (A:1-248)
1b: CATH_2pnfB00 (B:1-248)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Aquifex aeolicus vf5. Organism_taxid: 224324. Strain: vf5.
(5)
1a
2pnfA00
A:1-248
1b
2pnfB00
B:1-248
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_C2_2pnfB01 (B:13-248)
1b: PFAM_adh_short_C2_2pnfB02 (B:13-248)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Aquifex aeolicus
(3)
1a
adh_short_C2-2pnfB01
B:13-248
1b
adh_short_C2-2pnfB02
B:13-248
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Asym.Unit (89 KB)
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