PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2PNB
Asym. Unit
Info
Asym.Unit (32 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF AN SH2 DOMAIN OF THE P85 ALPHA SUBUNIT OF PHOSPHATIDYLINOSITOL-3-OH KINASE
Authors
:
G. W. Booker, A. L. Breeze, A. K. Downing, G. Panayotou, I. Gout, M. D. Waterfield, I. D. Campbell
Date
:
30 Jun 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Signalling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. W. Booker, A. L. Breeze, A. K. Downing, G. Panayotou, I. Gout, M. D. Waterfield, I. D. Campbell
Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of Phosphatidylinositol-3-Oh Kinase.
Nature V. 358 684 1992
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(1, 1)
Info
All Sites
1: PYB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
PYB
UNKNOWN
ARG A:29 , ARG A:47 , LEU A:69
NULL
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:22-117|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
P85A_BOVIN
333-428
624-718
1
A:22-117
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.9 (A:17-27)
Exon 1.10 (A:27-60)
Exon 1.11 (A:60-120)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000014594
1
ENSBTAE00000118499
chr20:
12172102-12171896
207
P85A_BOVIN
1-69
69
0
-
-
1.2
ENSBTAT00000014594
2
ENSBTAE00000360578
chr20:
12171893-12171873
21
P85A_BOVIN
70-76
7
0
-
-
1.3
ENSBTAT00000014594
3
ENSBTAE00000360575
chr20:
12171871-12171772
100
P85A_BOVIN
77-110
34
0
-
-
1.4
ENSBTAT00000014594
4
ENSBTAE00000118502
chr20:
12116402-12116310
93
P85A_BOVIN
110-141
32
0
-
-
1.5
ENSBTAT00000014594
5
ENSBTAE00000118505
chr20:
12115870-12115796
75
P85A_BOVIN
141-166
26
0
-
-
1.6
ENSBTAT00000014594
6
ENSBTAE00000118508
chr20:
12109683-12109552
132
P85A_BOVIN
166-210
45
0
-
-
1.7
ENSBTAT00000014594
7
ENSBTAE00000118513
chr20:
12108777-12108576
202
P85A_BOVIN
210-277
68
0
-
-
1.8
ENSBTAT00000014594
8
ENSBTAE00000118521
chr20:
12108363-12108284
80
P85A_BOVIN
277-304
28
0
-
-
1.9
ENSBTAT00000014594
9
ENSBTAE00000118524
chr20:
12096848-12096746
103
P85A_BOVIN
304-338
35
1
A:17-27
11
1.10
ENSBTAT00000014594
10
ENSBTAE00000118529
chr20:
12096209-12096111
99
P85A_BOVIN
338-371
34
1
A:27-60
34
1.11
ENSBTAT00000014594
11
ENSBTAE00000118551
chr20:
12095995-12095815
181
P85A_BOVIN
371-431
61
1
A:60-120
61
1.12
ENSBTAT00000014594
12
ENSBTAE00000118564
chr20:
12095545-12095420
126
P85A_BOVIN
432-473
42
0
-
-
1.13
ENSBTAT00000014594
13
ENSBTAE00000118592
chr20:
12094684-12094542
143
P85A_BOVIN
474-521
48
0
-
-
1.14
ENSBTAT00000014594
14
ENSBTAE00000118601
chr20:
12094333-12094157
177
P85A_BOVIN
521-580
60
0
-
-
1.15
ENSBTAT00000014594
15
ENSBTAE00000118603
chr20:
12094058-12093990
69
P85A_BOVIN
580-603
24
0
-
-
1.16
ENSBTAT00000014594
16
ENSBTAE00000118605
chr20:
12093272-12093102
171
P85A_BOVIN
603-660
58
0
-
-
1.17
ENSBTAT00000014594
17
ENSBTAE00000385919
chr20:
12092222-12092033
190
P85A_BOVIN
660-722
63
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pnba_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Phosphatidylinositol 3-kinase, p85-alpha subunit
(11)
Cow (Bos taurus) [TaxId: 9913]
(7)
1a
d2pnba_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2pnbA00 (A:17-120)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Cattle (Bos taurus)
(9)
1a
2pnbA00
A:17-120
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH2_2pnbA01 (A:22-97)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Bos taurus (Bovine)
(6)
1a
SH2-2pnbA01
A:22-97
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (32 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2PNB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help