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2PN8
Asym. Unit
Info
Asym.Unit (360 KB)
Biol.Unit 1 (351 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PEROXIREDOXIN 4 (THIOREDOXIN PEROXIDASE)
Authors
:
E. S. Pilka, K. L. Kavanagh, C. Cooper, F. Von Delft, M. Sundstrom, C. A. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
24 Apr 07 (Deposition) - 22 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Peroxiredoxin, Thioredoxin, Oxidoreductase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Pilka, K. L. Kavanagh, C. Cooper, F. Von Delft, M. Sundstrom, C. A. Arrowsmith, J. Weigelt, A. Edwards, U. Oppermann
Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase).
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:82-237,B:82-237,C:82-237,D:82-23...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
PRDX4_HUMAN
79-237
10
A:82-237
B:82-237
C:82-237
D:82-237
E:82-237
F:82-237
G:82-237
H:82-237
I:82-237
J:82-237
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Exons
(7, 70)
Info
All Exons
Exon 1.2a (A:79-81 | B:79-81 | C:79-81 | D:79...)
Exon 1.4 (A:82-120 | B:82-120 | C:82-120 | D...)
Exon 1.5a (A:120-159 | B:120-159 | C:120-159 ...)
Exon 1.6b (A:159-200 | B:159-200 | C:159-200 ...)
Exon 1.7 (A:200-244 | B:200-244 | C:200-244 ...)
Exon 1.8 (A:244-255 | B:244-255 | C:244-255 ...)
Exon 1.10c (A:256-269 | B:256-269 | C:256-269 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6b
5: Boundary 1.6b/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.10c
8: Boundary 1.10c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000379341
2a
ENSE00001858070
X:23685563-23685928
366
PRDX4_HUMAN
1-81
81
10
A:79-81
B:79-81
C:79-81
D:79-81
E:79-81
F:79-81
G:79-81
H:79-81
I:79-81
J:79-81
3
3
3
3
3
3
3
3
3
3
1.4
ENST00000379341
4
ENSE00000836232
X:23689646-23689763
118
PRDX4_HUMAN
81-120
40
10
A:82-120
B:82-120
C:82-120
D:82-120
E:82-120
F:82-120
G:82-120
H:82-120
I:82-120
J:82-120
39
39
39
39
39
39
39
39
39
39
1.5a
ENST00000379341
5a
ENSE00000836233
X:23693107-23693223
117
PRDX4_HUMAN
120-159
40
10
A:120-159
B:120-159
C:120-159
D:120-159
E:120-159
F:120-159
G:120-159
H:120-159
I:120-159
J:120-159
40
40
40
40
40
40
40
40
40
40
1.6b
ENST00000379341
6b
ENSE00002147918
X:23697282-23697404
123
PRDX4_HUMAN
159-200
42
10
A:159-200
B:159-200
C:159-200
D:159-200
E:159-200
F:159-200
G:159-200
H:159-200
I:159-200
J:159-200
42
42
42
42
42
42
42
42
42
42
1.7
ENST00000379341
7
ENSE00000836235
X:23700513-23700643
131
PRDX4_HUMAN
200-244
45
10
A:200-244
B:200-244
C:200-244
D:200-244
E:200-244
F:200-244
G:200-244
H:200-244
I:200-244
J:200-244
45
45
45
45
45
45
45
45
45
45
1.8
ENST00000379341
8
ENSE00000836236
X:23701788-23701822
35
PRDX4_HUMAN
244-255
12
10
A:244-255
B:244-255
C:244-255
D:244-255
E:244-255
F:244-255
G:244-255
H:244-255
I:244-255
J:244-255
12
12
12
12
12
12
12
12
12
12
1.10c
ENST00000379341
10c
ENSE00001828273
X:23704402-23704516
115
PRDX4_HUMAN
256-271
16
10
A:256-269
B:256-269
C:256-269
D:256-269
E:256-269
F:256-269
G:256-269
H:256-268
I:256-268
J:256-269
14
14
14
14
14
14
14
13
13
14
[
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SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2pn8a_ (A:)
1b: SCOP_d2pn8b_ (B:)
1c: SCOP_d2pn8c_ (C:)
1d: SCOP_d2pn8d_ (D:)
1e: SCOP_d2pn8e_ (E:)
1f: SCOP_d2pn8f_ (F:)
1g: SCOP_d2pn8g_ (G:)
1h: SCOP_d2pn8h_ (H:)
1i: SCOP_d2pn8i_ (I:)
1j: SCOP_d2pn8j_ (J:)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
1a
d2pn8a_
A:
1b
d2pn8b_
B:
1c
d2pn8c_
C:
1d
d2pn8d_
D:
1e
d2pn8e_
E:
1f
d2pn8f_
F:
1g
d2pn8g_
G:
1h
d2pn8h_
H:
1i
d2pn8i_
I:
1j
d2pn8j_
J:
[
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_2pn8H00 (H:79-268)
1b: CATH_2pn8I00 (I:79-268)
1c: CATH_2pn8A00 (A:79-269)
1d: CATH_2pn8B00 (B:79-269)
1e: CATH_2pn8C00 (C:79-269)
1f: CATH_2pn8D00 (D:79-269)
1g: CATH_2pn8E00 (E:79-269)
1h: CATH_2pn8F00 (F:79-269)
1i: CATH_2pn8G00 (G:79-269)
1j: CATH_2pn8J00 (J:79-269)
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)
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)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
2pn8H00
H:79-268
1b
2pn8I00
I:79-268
1c
2pn8A00
A:79-269
1d
2pn8B00
B:79-269
1e
2pn8C00
C:79-269
1f
2pn8D00
D:79-269
1g
2pn8E00
E:79-269
1h
2pn8F00
F:79-269
1i
2pn8G00
G:79-269
1j
2pn8J00
J:79-269
[
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Pfam Domains
(2, 20)
Info
all PFAM domains
1a: PFAM_AhpC_TSA_2pn8J01 (J:84-214)
1b: PFAM_AhpC_TSA_2pn8J02 (J:84-214)
1c: PFAM_AhpC_TSA_2pn8J03 (J:84-214)
1d: PFAM_AhpC_TSA_2pn8J04 (J:84-214)
1e: PFAM_AhpC_TSA_2pn8J05 (J:84-214)
1f: PFAM_AhpC_TSA_2pn8J06 (J:84-214)
1g: PFAM_AhpC_TSA_2pn8J07 (J:84-214)
1h: PFAM_AhpC_TSA_2pn8J08 (J:84-214)
1i: PFAM_AhpC_TSA_2pn8J09 (J:84-214)
1j: PFAM_AhpC_TSA_2pn8J10 (J:84-214)
2a: PFAM_1_cysPrx_C_2pn8J11 (J:234-269)
2b: PFAM_1_cysPrx_C_2pn8J12 (J:234-269)
2c: PFAM_1_cysPrx_C_2pn8J13 (J:234-269)
2d: PFAM_1_cysPrx_C_2pn8J14 (J:234-269)
2e: PFAM_1_cysPrx_C_2pn8J15 (J:234-269)
2f: PFAM_1_cysPrx_C_2pn8J16 (J:234-269)
2g: PFAM_1_cysPrx_C_2pn8J17 (J:234-269)
2h: PFAM_1_cysPrx_C_2pn8J18 (J:234-269)
2i: PFAM_1_cysPrx_C_2pn8J19 (J:234-269)
2j: PFAM_1_cysPrx_C_2pn8J20 (J:234-269)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thioredoxin
(367)
Family
:
AhpC-TSA
(28)
Homo sapiens (Human)
(4)
1a
AhpC-TSA-2pn8J01
J:84-214
1b
AhpC-TSA-2pn8J02
J:84-214
1c
AhpC-TSA-2pn8J03
J:84-214
1d
AhpC-TSA-2pn8J04
J:84-214
1e
AhpC-TSA-2pn8J05
J:84-214
1f
AhpC-TSA-2pn8J06
J:84-214
1g
AhpC-TSA-2pn8J07
J:84-214
1h
AhpC-TSA-2pn8J08
J:84-214
1i
AhpC-TSA-2pn8J09
J:84-214
1j
AhpC-TSA-2pn8J10
J:84-214
Clan
:
no clan defined [family: 1-cysPrx_C]
(19)
Family
:
1-cysPrx_C
(19)
Homo sapiens (Human)
(4)
2a
1-cysPrx_C-2pn8J11
J:234-269
2b
1-cysPrx_C-2pn8J12
J:234-269
2c
1-cysPrx_C-2pn8J13
J:234-269
2d
1-cysPrx_C-2pn8J14
J:234-269
2e
1-cysPrx_C-2pn8J15
J:234-269
2f
1-cysPrx_C-2pn8J16
J:234-269
2g
1-cysPrx_C-2pn8J17
J:234-269
2h
1-cysPrx_C-2pn8J18
J:234-269
2i
1-cysPrx_C-2pn8J19
J:234-269
2j
1-cysPrx_C-2pn8J20
J:234-269
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