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2PME
Asym. Unit
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Asym.Unit (93 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
THE APO CRYSTAL STRUCTURE OF THE GLYCYL-TRNA SYNTHETASE
Authors
:
W. Xie
Date
:
21 Apr 07 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Classiia Aminoacyl Trna Synthetase, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Xie, L. A. Nangle, W. Zhang, P. Schimmel, X. L. Yang
Long-Range Structural Effects Of A Charcot-Marie- Tooth Disease-Causing Mutation In Human Glycyl-Trna Synthetase.
Proc. Natl. Acad. Sci. Usa V. 104 9976 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_018718 (E71G, chain A, )
02: VAR_018719 (L129P, chain A, )
03: VAR_073188 (D146N, chain A, )
04: VAR_073189 (S211F, chain A, )
05: VAR_054866 (T214I, chain A, )
06: VAR_018720 (G240R, chain A, )
07: VAR_073190 (P244L, chain A, )
08: VAR_073191 (I280F, chain A, )
09: VAR_054867 (R334Q, chain A, )
10: VAR_073192 (H418R, chain A, )
11: VAR_018721 (G526R, chain A, )
12: VAR_073194 (S581L, chain A, )
13: VAR_073195 (G598A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_018718
E
125
G
SYG_HUMAN
Disease (CMT2D)
28936972
A
E
71
G
02
UniProt
VAR_018719
L
183
P
SYG_HUMAN
Disease (HMN5A)
---
A
L
129
P
03
UniProt
VAR_073188
D
200
N
SYG_HUMAN
Disease (CMT2D)
---
A
D
146
N
04
UniProt
VAR_073189
S
265
F
SYG_HUMAN
Disease (CMT2D)
---
A
S
211
F
05
UniProt
VAR_054866
T
268
I
SYG_HUMAN
Polymorphism
2230310
A
T
214
I
06
UniProt
VAR_018720
G
294
R
SYG_HUMAN
Disease (CMT2D)
---
A
G
240
R
07
UniProt
VAR_073190
P
298
L
SYG_HUMAN
Disease (CMT2D)
---
A
P
244
L
08
UniProt
VAR_073191
I
334
F
SYG_HUMAN
Disease (CMT2D)
---
A
I
280
F
09
UniProt
VAR_054867
R
388
Q
SYG_HUMAN
Polymorphism
17159287
A
R
334
Q
10
UniProt
VAR_073192
H
472
R
SYG_HUMAN
Disease (HMN5A)
---
A
H
418
R
11
UniProt
VAR_018721
G
580
R
SYG_HUMAN
Disease (HMN5A)
28937323
A
G
526
R
12
UniProt
VAR_073194
S
635
L
SYG_HUMAN
Polymorphism
---
A
S
581
L
13
UniProt
VAR_073195
G
652
A
SYG_HUMAN
Disease (CMT2D)
---
A
G
598
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(14, 14)
Info
All Exons
Exon 1.4 (A:63-89)
Exon 1.5 (A:89-136)
Exon 1.6b (A:136-166)
Exon 1.7 (A:166-191)
Exon 1.8 (A:192-240)
Exon 1.9 (A:240-290)
Exon 1.11 (A:290-344)
Exon 1.12 (A:345-399 (gaps))
Exon 1.13a (A:400-420)
Exon 1.15 (A:505-513)
Exon 1.17c (A:513-549 (gaps))
Exon 1.18b (A:550-581)
Exon 1.19d (A:581-644)
Exon 1.20b (A:645-674)
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All Exon Boundaries
01: Boundary 1.3/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6b
04: Boundary 1.6b/1.7
05: Boundary 1.7/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13a
10: Boundary 1.13a/1.14b
11: Boundary 1.14b/1.15
12: Boundary 1.15/1.17c
13: Boundary 1.17c/1.18b
14: Boundary 1.18b/1.19d
15: Boundary 1.19d/1.20b
16: Boundary 1.20b/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000389266
1a
ENSE00000832199
chr7:
30634297-30634759
463
GARS_HUMAN
1-74
74
0
-
-
1.3
ENST00000389266
3
ENSE00001698528
chr7:
30638412-30638513
102
GARS_HUMAN
75-108
34
0
-
-
1.4
ENST00000389266
4
ENSE00001722229
chr7:
30639563-30639665
103
GARS_HUMAN
109-143
35
1
A:63-89
27
1.5
ENST00000389266
5
ENSE00001788958
chr7:
30640675-30640816
142
GARS_HUMAN
143-190
48
1
A:89-136
48
1.6b
ENST00000389266
6b
ENSE00000674849
chr7:
30642650-30642738
89
GARS_HUMAN
190-220
31
1
A:136-166
31
1.7
ENST00000389266
7
ENSE00000674850
chr7:
30643112-30643188
77
GARS_HUMAN
220-245
26
1
A:166-191
26
1.8
ENST00000389266
8
ENSE00000674851
chr7:
30649201-30649346
146
GARS_HUMAN
246-294
49
1
A:192-240
49
1.9
ENST00000389266
9
ENSE00000674852
chr7:
30651712-30651861
150
GARS_HUMAN
294-344
51
1
A:240-290
51
1.11
ENST00000389266
11
ENSE00000674853
chr7:
30655512-30655674
163
GARS_HUMAN
344-398
55
1
A:290-344
55
1.12
ENST00000389266
12
ENSE00000674854
chr7:
30656730-30656894
165
GARS_HUMAN
399-453
55
1
A:345-399 (gaps)
55
1.13a
ENST00000389266
13a
ENSE00001505312
chr7:
30661009-30661116
108
GARS_HUMAN
454-489
36
1
A:400-420
21
1.14b
ENST00000389266
14b
ENSE00001505311
chr7:
30661933-30662078
146
GARS_HUMAN
490-538
49
0
-
-
1.15
ENST00000389266
15
ENSE00000674858
chr7:
30665850-30665935
86
GARS_HUMAN
538-567
30
1
A:505-513
9
1.17c
ENST00000389266
17c
ENSE00001788803
chr7:
30668176-30668285
110
GARS_HUMAN
567-603
37
1
A:513-549 (gaps)
37
1.18b
ENST00000389266
18b
ENSE00001796643
chr7:
30671064-30671157
94
GARS_HUMAN
604-635
32
1
A:550-581
32
1.19d
ENST00000389266
19d
ENSE00000674864
chr7:
30671863-30672053
191
GARS_HUMAN
635-698
64
1
A:581-644
64
1.20b
ENST00000389266
20b
ENSE00001907883
chr7:
30673351-30673649
299
GARS_HUMAN
699-739
41
1
A:645-674
30
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SCOP Domains
(0, 0)
Info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2pmeA01 (A:63-142,A:227-552)
2a: CATH_2pmeA03 (A:553-674)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
BirA Bifunctional Protein; domain 2
(111)
Homologous Superfamily
:
Bira Bifunctional Protein; Domain 2
(111)
Human (Homo sapiens)
(11)
1a
2pmeA01
A:63-142,A:227-552
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.800, no name defined]
(40)
Human (Homo sapiens)
(10)
2a
2pmeA03
A:553-674
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Pfam Domains
(0, 0)
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