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2PKT
Asym. Unit
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Asym.Unit (23 KB)
Biol.Unit 1 (18 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN CLP-36 (PDLIM1) BOUND TO THE C-TERMINAL PEPTIDE OF HUMAN ALPHA-ACTININ-1
Authors
:
J. Uppenberg, C. Gileadi, J. Elkins, J. Bray, N. Burgess-Brown, E. Sala O. Gileadi, G. Bunkoczi, E. Ugochukwu, C. Umeano, F. Von Delft, J. Wei C. H. Arrowsmith, A. Edwards, M. Sundstrom, D. A. Doyle, Structural G Consortium (Sgc)
Date
:
18 Apr 07 (Deposition) - 08 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pdz Domain, Structural Genomics, Structural Genomics Consortium, Sgc, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Uppenberg, C. Gileadi, J. Elkins, J. Bray, N. Burgess-Brown, E. Salah, O. Gileadi, G. Bunkoczi, E. Ugochukwu, C. Umeano, F. Von Delft, J. Weigelt, C. H. Arrowsmith, A. Edwards, M. Sundstrom, D. A. Doyle
The Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To The C-Terminal Peptide Of Human Alpha-Actinin-1.
To Be Published
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: CHLORIDE ION (CLa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
2
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:54 , GLU A:56 , ASN A:76 , HOH A:214 , HOH A:237
BINDING SITE FOR RESIDUE CA A 201
2
AC2
SOFTWARE
ASP A:89 , ACT A:204 , HOH A:215
BINDING SITE FOR RESIDUE CA A 202
3
AC3
SOFTWARE
THR A:34
BINDING SITE FOR RESIDUE CL A 203
4
AC4
SOFTWARE
ARG A:17 , GLU A:87 , ASP A:89 , CA A:202 , HOH A:232
BINDING SITE FOR RESIDUE ACT A 204
5
AC5
SOFTWARE
LYS A:22 , GLU A:25 , GLN A:26 , PRO A:27 , LEU A:28 , VAL A:49 , ILE A:50 , THR A:58 , SER A:59 , HOH A:238
BINDING SITE FOR RESIDUE PG4 A 205
6
AC6
SOFTWARE
GLY A:12 , VAL A:33 , PRO A:35
BINDING SITE FOR RESIDUE PEG A 206
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:3-85)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
PDLI1_HUMAN
3-85
1
A:3-85
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:1-32)
Exon 1.3 (A:33-83)
Exon 1.4 (A:83-90 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000329399
1a
ENSE00001306547
chr10:
97050781-97050577
205
PDLI1_HUMAN
1-32
32
1
A:1-32
32
1.3
ENST00000329399
3
ENSE00000986618
chr10:
97031541-97031390
152
PDLI1_HUMAN
33-83
51
1
A:33-83
51
1.4
ENST00000329399
4
ENSE00000986619
chr10:
97028619-97028535
85
PDLI1_HUMAN
83-111
29
1
A:83-90 (gaps)
10
1.5b
ENST00000329399
5b
ENSE00000716582
chr10:
97023820-97023621
200
PDLI1_HUMAN
112-178
67
0
-
-
1.6b
ENST00000329399
6b
ENSE00000933030
chr10:
97007123-97006972
152
PDLI1_HUMAN
178-229
52
0
-
-
1.7c
ENST00000329399
7c
ENSE00000933031
chr10:
96998442-96998325
118
PDLI1_HUMAN
229-268
40
0
-
-
1.8c
ENST00000329399
8c
ENSE00001454795
chr10:
96997868-96997329
540
PDLI1_HUMAN
268-329
62
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pkta_ (A:)
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Protein Domains
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(
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)
(
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
automated matches
(53)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d2pkta_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2pktA00 (A:0-90)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2pktA00
A:0-90
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PDZ_2pktA01 (A:3-82)
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2pktA01
A:3-82
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Asymmetric Unit 1
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