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2PKR
Asym. Unit
Info
Asym.Unit (640 KB)
Biol.Unit 1 (217 KB)
Biol.Unit 2 (216 KB)
Biol.Unit 3 (215 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF (A+CTE)4 CHIMERIC FORM OF PHOTOSYNTETIC GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, COMPLEXED WITH NADP
Authors
:
S. Fermani, G. Falini, A. Ripamonti
Date
:
18 Apr 07 (Deposition) - 19 Jun 07 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,H,I,L,M,O,P,Q,R
Biol. Unit 1: O,P,Q,R (1x)
Biol. Unit 2: A,B,C,D (1x)
Biol. Unit 3: H,I,L,M (1x)
Keywords
:
Chimeric Protein, Rossmann Fold, Nadp Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Fermani, F. Sparla, G. Falini, P. L. Martelli, R. Casadio, P. Pupillo, A. Ripamonti, P. Trost
Molecular Mechanism Of Thioredoxin Regulation In Photosynthetic A2B2-Glyceraldehyde-3-Phosphate Dehydrogenase.
Proc. Natl. Acad. Sci. Usa V. 104 11109 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 46)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
1c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
1d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
1e: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPe)
1f: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPf)
1g: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPg)
1h: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPh)
1i: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPi)
1j: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPj)
1k: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPk)
1l: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPl)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NDP
12
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
SO4
34
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , NDP O:372
BINDING SITE FOR RESIDUE SO4 O 363
02
AC2
SOFTWARE
SER O:148 , THR O:150 , THR O:208 , GLY O:209 , ALA O:210
BINDING SITE FOR RESIDUE SO4 O 364
03
AC3
SOFTWARE
PHE O:251 , ALA O:252 , GLU O:253
BINDING SITE FOR RESIDUE SO4 O 371
04
AC4
SOFTWARE
THR R:179 , ASP R:181 , ARG R:195 , ARG R:231 , SO4 R:364 , NDP R:377
BINDING SITE FOR RESIDUE SO4 R 363
05
AC5
SOFTWARE
SER R:148 , CYS R:149 , THR R:150 , THR R:208 , SO4 R:363
BINDING SITE FOR RESIDUE SO4 R 364
06
AC6
SOFTWARE
PHE R:251 , ALA R:252 , VAL R:299
BINDING SITE FOR RESIDUE SO4 R 376
07
AC7
SOFTWARE
THR P:179 , ASP P:181 , ARG P:195 , ARG P:231 , SO4 P:364 , NDP P:373
BINDING SITE FOR RESIDUE SO4 P 363
08
AC8
SOFTWARE
SER P:148 , CYS P:149 , THR P:150 , HIS P:176 , THR P:208 , GLY P:209 , SO4 P:363
BINDING SITE FOR RESIDUE SO4 P 364
09
AC9
SOFTWARE
GLU P:253 , ASN P:256 , ARG P:260
BINDING SITE FOR RESIDUE SO4 P 372
10
BC1
SOFTWARE
THR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , SO4 Q:364 , NDP Q:375
BINDING SITE FOR RESIDUE SO4 Q 363
11
BC2
SOFTWARE
SER Q:148 , CYS Q:149 , THR Q:150 , HIS Q:176 , THR Q:208 , ARG Q:231 , SO4 Q:363
BINDING SITE FOR RESIDUE SO4 Q 364
12
BC3
SOFTWARE
GLU O:276 , SER Q:41 , HIS Q:42 , LYS Q:45 , TYR Q:46 , VAL Q:57
BINDING SITE FOR RESIDUE SO4 Q 373
13
BC4
SOFTWARE
SER Q:62 , LYS Q:72
BINDING SITE FOR RESIDUE SO4 Q 374
14
BC5
SOFTWARE
THR A:179 , ASP A:181 , ARG A:195 , ARG A:231 , NDP A:376
BINDING SITE FOR RESIDUE SO4 A 363
15
BC6
SOFTWARE
SER A:148 , CYS A:149 , THR A:150 , HIS A:176 , THR A:208 , GLY A:209
BINDING SITE FOR RESIDUE SO4 A 364
16
BC7
SOFTWARE
GLU A:253 , ASN A:256 , ARG A:260
BINDING SITE FOR RESIDUE SO4 A 375
17
BC8
SOFTWARE
THR B:179 , ASP B:181 , ARG B:195 , ARG B:231 , NDP B:378
BINDING SITE FOR RESIDUE SO4 B 363
18
BC9
SOFTWARE
SER B:148 , CYS B:149 , THR B:150 , HIS B:176 , THR B:208
BINDING SITE FOR RESIDUE SO4 B 364
19
CC1
SOFTWARE
SER B:41 , HIS B:42 , VAL B:57 , GLU C:276
BINDING SITE FOR RESIDUE SO4 B 377
20
CC2
SOFTWARE
THR C:179 , ASP C:181 , ARG C:195 , NDP C:365
BINDING SITE FOR RESIDUE SO4 C 363
21
CC3
SOFTWARE
SER C:148 , THR C:150 , THR C:208 , GLY C:209 , ALA C:210
BINDING SITE FOR RESIDUE SO4 C 364
22
CC4
SOFTWARE
THR D:179 , ASP D:181 , ARG D:195 , ARG D:231 , NDP D:365
BINDING SITE FOR RESIDUE SO4 D 363
23
CC5
SOFTWARE
SER D:148 , THR D:150 , THR D:208
BINDING SITE FOR RESIDUE SO4 D 364
24
CC6
SOFTWARE
THR H:179 , ASP H:181 , ARG H:195 , ARG H:231 , NDP H:379
BINDING SITE FOR RESIDUE SO4 H 363
25
CC7
SOFTWARE
SER H:148 , CYS H:149 , THR H:150 , HIS H:176 , THR H:208
BINDING SITE FOR RESIDUE SO4 H 364
26
CC8
SOFTWARE
PHE H:251 , ALA H:252 , GLU H:253 , VAL H:299
BINDING SITE FOR RESIDUE SO4 H 378
27
CC9
SOFTWARE
THR I:179 , ASP I:181 , ARG I:195 , ARG I:231 , NDP I:380
BINDING SITE FOR RESIDUE SO4 I 365
28
DC1
SOFTWARE
SER I:148 , THR I:208 , GLY I:209 , ALA I:210
BINDING SITE FOR RESIDUE SO4 I 366
29
DC2
SOFTWARE
GLU I:253 , ASN I:256 , ARG I:260 , SER I:294
BINDING SITE FOR RESIDUE SO4 I 379
30
DC3
SOFTWARE
THR L:179 , ASP L:181 , ARG L:195 , ARG L:231 , NDP L:369
BINDING SITE FOR RESIDUE SO4 L 367
31
DC4
SOFTWARE
SER L:148 , THR L:150 , HIS L:176 , THR L:208 , GLY L:209
BINDING SITE FOR RESIDUE SO4 L 368
32
DC5
SOFTWARE
THR M:179 , ASP M:181 , ARG M:195 , ARG M:231 , NDP M:381
BINDING SITE FOR RESIDUE SO4 M 369
33
DC6
SOFTWARE
SER M:148 , CYS M:149 , THR M:150 , THR M:208
BINDING SITE FOR RESIDUE SO4 M 370
34
DC7
SOFTWARE
SER M:62 , LYS M:72
BINDING SITE FOR RESIDUE SO4 M 380
35
DC8
SOFTWARE
PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASN O:31 , ASP O:76 , ARG O:77 , GLY O:95 , THR O:96 , GLY O:97 , VAL O:98 , PHE O:99 , THR O:119 , ALA O:120 , ASN O:313 , GLU O:314 , TYR O:317 , SO4 O:363 , ARG R:183 , SER R:188
BINDING SITE FOR RESIDUE NDP O 372
36
DC9
SOFTWARE
ARG O:183 , SER O:188 , PHE R:8 , GLY R:9 , ARG R:10 , ILE R:11 , ASN R:31 , THR R:33 , ASP R:76 , ARG R:77 , GLY R:95 , THR R:96 , GLY R:97 , VAL R:98 , PHE R:99 , THR R:119 , ALA R:120 , ASN R:313 , GLU R:314 , TYR R:317 , SO4 R:363
BINDING SITE FOR RESIDUE NDP R 377
37
EC1
SOFTWARE
PHE P:8 , GLY P:9 , ARG P:10 , ILE P:11 , ASN P:31 , ASP P:76 , ARG P:77 , GLY P:95 , THR P:96 , GLY P:97 , PHE P:99 , THR P:119 , ALA P:120 , ASN P:313 , GLU P:314 , TYR P:317 , SO4 P:363 , ARG Q:183 , SER Q:188
BINDING SITE FOR RESIDUE NDP P 373
38
EC2
SOFTWARE
ARG P:183 , SER P:188 , GLY Q:7 , PHE Q:8 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASN Q:31 , THR Q:33 , ASP Q:76 , ARG Q:77 , GLY Q:95 , THR Q:96 , GLY Q:97 , VAL Q:98 , PHE Q:99 , THR Q:119 , ALA Q:120 , CYS Q:149 , ASN Q:313 , TYR Q:317 , SO4 Q:363
BINDING SITE FOR RESIDUE NDP Q 375
39
EC3
SOFTWARE
GLY A:7 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASN A:31 , ASP A:76 , ARG A:77 , GLY A:95 , THR A:96 , GLY A:97 , PHE A:99 , THR A:119 , ALA A:120 , ASN A:313 , GLU A:314 , TYR A:317 , SO4 A:363 , SER B:188
BINDING SITE FOR RESIDUE NDP A 376
40
EC4
SOFTWARE
SER A:188 , GLY B:7 , PHE B:8 , GLY B:9 , ARG B:10 , ILE B:11 , ASN B:31 , ASP B:76 , ARG B:77 , GLY B:95 , THR B:96 , GLY B:97 , VAL B:98 , PHE B:99 , THR B:119 , ALA B:120 , ASN B:313 , TYR B:317 , SO4 B:363
BINDING SITE FOR RESIDUE NDP B 378
41
EC5
SOFTWARE
PHE C:8 , GLY C:9 , ARG C:10 , ILE C:11 , ASN C:31 , ASP C:76 , ARG C:77 , GLY C:95 , THR C:96 , GLY C:97 , VAL C:98 , PHE C:99 , THR C:119 , ALA C:120 , ASN C:313 , GLU C:314 , TYR C:317 , SO4 C:363 , ARG D:183 , SER D:188
BINDING SITE FOR RESIDUE NDP C 365
42
EC6
SOFTWARE
ARG C:183 , SER C:188 , PHE D:8 , GLY D:9 , ARG D:10 , ILE D:11 , ASN D:31 , ASP D:76 , ARG D:77 , GLY D:95 , THR D:96 , GLY D:97 , VAL D:98 , PHE D:99 , THR D:119 , ALA D:120 , ASN D:313 , TYR D:317 , SO4 D:363
BINDING SITE FOR RESIDUE NDP D 365
43
EC7
SOFTWARE
PHE H:8 , GLY H:9 , ARG H:10 , ILE H:11 , ASN H:31 , ASP H:76 , ARG H:77 , GLY H:95 , THR H:96 , GLY H:97 , VAL H:98 , PHE H:99 , THR H:119 , ALA H:120 , CYS H:149 , ASN H:313 , TYR H:317 , SO4 H:363 , SER I:188
BINDING SITE FOR RESIDUE NDP H 379
44
EC8
SOFTWARE
ARG H:183 , SER H:188 , GLY I:7 , PHE I:8 , GLY I:9 , ARG I:10 , ILE I:11 , ASN I:31 , ASP I:76 , ARG I:77 , GLY I:95 , THR I:96 , GLY I:97 , VAL I:98 , PHE I:99 , THR I:119 , ALA I:120 , ASN I:313 , TYR I:317 , SO4 I:365
BINDING SITE FOR RESIDUE NDP I 380
45
EC9
SOFTWARE
GLY L:7 , PHE L:8 , GLY L:9 , ARG L:10 , ILE L:11 , ASN L:31 , ASP L:76 , ARG L:77 , GLY L:95 , THR L:96 , GLY L:97 , VAL L:98 , PHE L:99 , THR L:119 , ALA L:120 , CYS L:149 , ASN L:313 , TYR L:317 , SO4 L:367 , ARG M:183 , SER M:188
BINDING SITE FOR RESIDUE NDP L 369
46
FC1
SOFTWARE
SER L:188 , GLY M:7 , PHE M:8 , GLY M:9 , ARG M:10 , ILE M:11 , ASN M:31 , ASP M:76 , ARG M:77 , GLY M:95 , THR M:96 , GLY M:97 , VAL M:98 , PHE M:99 , THR M:119 , ALA M:120 , ASN M:313 , TYR M:317 , SO4 M:369
BINDING SITE FOR RESIDUE NDP M 381
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: GAPDH (A:147-154,B:147-154,C:147-154,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3PA_SPIOL
216-223
12
A:147-154
B:147-154
C:147-154
D:147-154
H:147-154
I:147-154
L:147-154
M:147-154
O:147-154
P:147-154
Q:147-154
R:147-154
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2pkra2 (A:149-312)
1b: SCOP_d2pkrb2 (B:149-312)
1c: SCOP_d2pkrc2 (C:149-312)
1d: SCOP_d2pkrd2 (D:149-312)
1e: SCOP_d2pkrh2 (H:149-312)
1f: SCOP_d2pkri2 (I:149-312)
1g: SCOP_d2pkrl2 (L:149-312)
1h: SCOP_d2pkrm2 (M:149-312)
1i: SCOP_d2pkro2 (O:149-312)
1j: SCOP_d2pkrp2 (P:149-312)
1k: SCOP_d2pkrq2 (Q:149-312)
1l: SCOP_d2pkrr2 (R:149-312)
2a: SCOP_d2pkra1 (A:0-148,A:313-333)
2b: SCOP_d2pkrb1 (B:0-148,B:313-333)
2c: SCOP_d2pkrc1 (C:0-148,C:313-333)
2d: SCOP_d2pkrd1 (D:0-148,D:313-333)
2e: SCOP_d2pkrh1 (H:0-148,H:313-333)
2f: SCOP_d2pkri1 (I:0-148,I:313-333)
2g: SCOP_d2pkrl1 (L:0-148,L:313-333)
2h: SCOP_d2pkrm1 (M:0-148,M:313-333)
2i: SCOP_d2pkro1 (O:0-148,O:313-333)
2j: SCOP_d2pkrp1 (P:0-148,P:313-333)
2k: SCOP_d2pkrq1 (Q:0-148,Q:313-333)
2l: SCOP_d2pkrr1 (R:0-148,R:313-333)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Spinach (Spinacia oleracea) [TaxId: 3562]
(8)
1a
d2pkra2
A:149-312
1b
d2pkrb2
B:149-312
1c
d2pkrc2
C:149-312
1d
d2pkrd2
D:149-312
1e
d2pkrh2
H:149-312
1f
d2pkri2
I:149-312
1g
d2pkrl2
L:149-312
1h
d2pkrm2
M:149-312
1i
d2pkro2
O:149-312
1j
d2pkrp2
P:149-312
1k
d2pkrq2
Q:149-312
1l
d2pkrr2
R:149-312
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Spinach (Spinacia oleracea) [TaxId: 3562]
(8)
2a
d2pkra1
A:0-148,A:313-333
2b
d2pkrb1
B:0-148,B:313-333
2c
d2pkrc1
C:0-148,C:313-333
2d
d2pkrd1
D:0-148,D:313-333
2e
d2pkrh1
H:0-148,H:313-333
2f
d2pkri1
I:0-148,I:313-333
2g
d2pkrl1
L:0-148,L:313-333
2h
d2pkrm1
M:0-148,M:313-333
2i
d2pkro1
O:0-148,O:313-333
2j
d2pkrp1
P:0-148,P:313-333
2k
d2pkrq1
Q:0-148,Q:313-333
2l
d2pkrr1
R:0-148,R:313-333
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2pkrA02 (A:148-313)
1b: CATH_2pkrH02 (H:148-313)
1c: CATH_2pkrI02 (I:148-313)
1d: CATH_2pkrL02 (L:148-313)
1e: CATH_2pkrM02 (M:148-313)
1f: CATH_2pkrO02 (O:148-313)
1g: CATH_2pkrP02 (P:148-313)
1h: CATH_2pkrQ02 (Q:148-313)
1i: CATH_2pkrR02 (R:148-313)
1j: CATH_2pkrB02 (B:148-313)
1k: CATH_2pkrC02 (C:148-313)
1l: CATH_2pkrD02 (D:148-313)
2a: CATH_2pkrA01 (A:1-147,A:314-333)
2b: CATH_2pkrB01 (B:1-147,B:314-333)
2c: CATH_2pkrC01 (C:1-147,C:314-333)
2d: CATH_2pkrD01 (D:1-147,D:314-333)
2e: CATH_2pkrH01 (H:1-147,H:314-333)
2f: CATH_2pkrI01 (I:1-147,I:314-333)
2g: CATH_2pkrL01 (L:1-147,L:314-333)
2h: CATH_2pkrM01 (M:1-147,M:314-333)
2i: CATH_2pkrO01 (O:1-147,O:314-333)
2j: CATH_2pkrP01 (P:1-147,P:314-333)
2k: CATH_2pkrQ01 (Q:1-147,Q:314-333)
2l: CATH_2pkrR01 (R:1-147,R:314-333)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Spinach (Spinacia oleracea)
(8)
1a
2pkrA02
A:148-313
1b
2pkrH02
H:148-313
1c
2pkrI02
I:148-313
1d
2pkrL02
L:148-313
1e
2pkrM02
M:148-313
1f
2pkrO02
O:148-313
1g
2pkrP02
P:148-313
1h
2pkrQ02
Q:148-313
1i
2pkrR02
R:148-313
1j
2pkrB02
B:148-313
1k
2pkrC02
C:148-313
1l
2pkrD02
D:148-313
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Spinach (Spinacia oleracea)
(10)
2a
2pkrA01
A:1-147,A:314-333
2b
2pkrB01
B:1-147,B:314-333
2c
2pkrC01
C:1-147,C:314-333
2d
2pkrD01
D:1-147,D:314-333
2e
2pkrH01
H:1-147,H:314-333
2f
2pkrI01
I:1-147,I:314-333
2g
2pkrL01
L:1-147,L:314-333
2h
2pkrM01
M:1-147,M:314-333
2i
2pkrO01
O:1-147,O:314-333
2j
2pkrP01
P:1-147,P:314-333
2k
2pkrQ01
Q:1-147,Q:314-333
2l
2pkrR01
R:1-147,R:314-333
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Pfam Domains
(2, 24)
Info
all PFAM domains
1a: PFAM_Gp_dh_C_2pkrR01 (R:154-311)
1b: PFAM_Gp_dh_C_2pkrR02 (R:154-311)
1c: PFAM_Gp_dh_C_2pkrR03 (R:154-311)
1d: PFAM_Gp_dh_C_2pkrR04 (R:154-311)
1e: PFAM_Gp_dh_C_2pkrR05 (R:154-311)
1f: PFAM_Gp_dh_C_2pkrR06 (R:154-311)
1g: PFAM_Gp_dh_C_2pkrR07 (R:154-311)
1h: PFAM_Gp_dh_C_2pkrR08 (R:154-311)
1i: PFAM_Gp_dh_C_2pkrR09 (R:154-311)
1j: PFAM_Gp_dh_C_2pkrR10 (R:154-311)
1k: PFAM_Gp_dh_C_2pkrR11 (R:154-311)
1l: PFAM_Gp_dh_C_2pkrR12 (R:154-311)
2a: PFAM_Gp_dh_N_2pkrR13 (R:1-149)
2b: PFAM_Gp_dh_N_2pkrR14 (R:1-149)
2c: PFAM_Gp_dh_N_2pkrR15 (R:1-149)
2d: PFAM_Gp_dh_N_2pkrR16 (R:1-149)
2e: PFAM_Gp_dh_N_2pkrR17 (R:1-149)
2f: PFAM_Gp_dh_N_2pkrR18 (R:1-149)
2g: PFAM_Gp_dh_N_2pkrR19 (R:1-149)
2h: PFAM_Gp_dh_N_2pkrR20 (R:1-149)
2i: PFAM_Gp_dh_N_2pkrR21 (R:1-149)
2j: PFAM_Gp_dh_N_2pkrR22 (R:1-149)
2k: PFAM_Gp_dh_N_2pkrR23 (R:1-149)
2l: PFAM_Gp_dh_N_2pkrR24 (R:1-149)
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Organisms
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(
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Clan
:
GADPH_aa-bio_dh
(59)
Family
:
Gp_dh_C
(38)
Spinacia oleracea (Spinach)
(5)
1a
Gp_dh_C-2pkrR01
R:154-311
1b
Gp_dh_C-2pkrR02
R:154-311
1c
Gp_dh_C-2pkrR03
R:154-311
1d
Gp_dh_C-2pkrR04
R:154-311
1e
Gp_dh_C-2pkrR05
R:154-311
1f
Gp_dh_C-2pkrR06
R:154-311
1g
Gp_dh_C-2pkrR07
R:154-311
1h
Gp_dh_C-2pkrR08
R:154-311
1i
Gp_dh_C-2pkrR09
R:154-311
1j
Gp_dh_C-2pkrR10
R:154-311
1k
Gp_dh_C-2pkrR11
R:154-311
1l
Gp_dh_C-2pkrR12
R:154-311
Clan
:
NADP_Rossmann
(1239)
Family
:
Gp_dh_N
(38)
Spinacia oleracea (Spinach)
(5)
2a
Gp_dh_N-2pkrR13
R:1-149
2b
Gp_dh_N-2pkrR14
R:1-149
2c
Gp_dh_N-2pkrR15
R:1-149
2d
Gp_dh_N-2pkrR16
R:1-149
2e
Gp_dh_N-2pkrR17
R:1-149
2f
Gp_dh_N-2pkrR18
R:1-149
2g
Gp_dh_N-2pkrR19
R:1-149
2h
Gp_dh_N-2pkrR20
R:1-149
2i
Gp_dh_N-2pkrR21
R:1-149
2j
Gp_dh_N-2pkrR22
R:1-149
2k
Gp_dh_N-2pkrR23
R:1-149
2l
Gp_dh_N-2pkrR24
R:1-149
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