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2PKH
Asym. Unit
Info
Asym.Unit (212 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HISTIDINE UTILIZATION REPRESSOR FROM PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000
Authors
:
K. Tan, M. Zhou, S. Clancy, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date
:
17 Apr 07 (Deposition) - 15 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Apc84836, Histidine Utilization Repressor, Pseudomonas Syringae Pv. Tomato Str. Dc3000, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, M. Zhou, S. Clancy, A. Joachimiak
The Crystal Structure Of The C-Terminal Domain Of Histidine Utilization Repressor From Pseudomonas Syringae Pv. Tomato Str. Dc3000.
To Be Published
[
close entry info
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Hetero Components
(2, 48)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
32
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:1146 , ARG C:246 , TRP D:223
BINDING SITE FOR RESIDUE EDO C 1002
02
AC2
SOFTWARE
GLU D:155 , ARG D:157 , TYR D:178 , ARG D:220 , HOH D:1053 , HOH D:1092
BINDING SITE FOR RESIDUE EDO D 1003
03
AC3
SOFTWARE
HIS A:145 , THR A:173 , HOH A:1064
BINDING SITE FOR RESIDUE EDO A 1004
04
AC4
SOFTWARE
ALA B:127 , ASP B:131 , HOH B:1124 , HOH E:1133 , HOH E:1139
BINDING SITE FOR RESIDUE EDO E 1005
05
AC5
SOFTWARE
VAL D:193
BINDING SITE FOR RESIDUE EDO D 1006
06
AC6
SOFTWARE
GLU F:189 , TRP F:223
BINDING SITE FOR RESIDUE EDO F 1007
07
AC7
SOFTWARE
ALA H:199
BINDING SITE FOR RESIDUE EDO H 1008
08
AC8
SOFTWARE
MSE A:115 , HOH A:1144 , PRO B:186 , THR B:188 , SER B:224 , GLY B:225
BINDING SITE FOR RESIDUE EDO A 1009
09
AC9
SOFTWARE
GLN B:153 , THR B:176 , HOH B:1086 , HOH B:1147
BINDING SITE FOR RESIDUE EDO B 1010
10
BC1
SOFTWARE
GLN E:183 , HOH E:1145
BINDING SITE FOR RESIDUE EDO E 1011
11
BC2
SOFTWARE
VAL C:114
BINDING SITE FOR RESIDUE EDO C 1012
12
BC3
SOFTWARE
ASP D:210 , GLU D:213 , HOH D:1084 , ARG H:133
BINDING SITE FOR RESIDUE EDO D 1013
13
BC4
SOFTWARE
LEU A:198 , ALA A:199 , GLU A:200 , HOH A:1128
BINDING SITE FOR RESIDUE EDO A 1014
14
BC5
SOFTWARE
LYS D:169 , VAL F:114
BINDING SITE FOR RESIDUE EDO F 1015
15
BC6
SOFTWARE
LYS B:118 , GLU B:120 , HIS B:140 , HOH B:1121 , HOH B:1138 , HOH B:1146
BINDING SITE FOR RESIDUE EDO B 1016
16
BC7
SOFTWARE
ALA C:164 , PRO C:165 , ASP C:166 , TYR C:167 , TYR C:180 , VAL C:184
BINDING SITE FOR RESIDUE EDO C 1017
17
BC8
SOFTWARE
LYS C:205 , GLU G:244 , HOH G:1151 , VAL H:193
BINDING SITE FOR RESIDUE EDO G 1018
18
BC9
SOFTWARE
GLU H:191 , ARG H:219
BINDING SITE FOR RESIDUE EDO H 1019
19
CC1
SOFTWARE
GLY E:238 , ARG E:242 , HOH E:1144 , HOH E:1148 , GLU F:195
BINDING SITE FOR RESIDUE EDO E 1020
20
CC2
SOFTWARE
ILE B:150 , GLN B:208
BINDING SITE FOR RESIDUE EDO B 1021
21
CC3
SOFTWARE
HOH C:1045 , ARG H:240
BINDING SITE FOR RESIDUE EDO H 1022
22
CC4
SOFTWARE
HIS G:110 , HIS G:145 , GLN G:153 , HOH G:1143 , HOH G:1150
BINDING SITE FOR RESIDUE EDO G 1023
23
CC5
SOFTWARE
VAL A:114 , MSE A:115 , HOH A:1139
BINDING SITE FOR RESIDUE EDO A 1024
24
CC6
SOFTWARE
LEU G:198 , ASP H:210 , GLY H:212 , GLU H:213
BINDING SITE FOR RESIDUE EDO H 1025
25
CC7
SOFTWARE
ASP B:210 , GLU B:213 , HOH B:1141 , HOH B:1144 , HOH B:1145
BINDING SITE FOR RESIDUE EDO B 1026
26
CC8
SOFTWARE
VAL E:114 , HOH E:1149
BINDING SITE FOR RESIDUE EDO E 1027
27
CC9
SOFTWARE
ARG B:133 , ILE F:209 , ASP F:210 , GLU F:213 , HOH F:1149
BINDING SITE FOR RESIDUE EDO F 1028
28
DC1
SOFTWARE
LYS A:118 , GLU A:119 , LEU B:130 , ASP B:131 , GLN B:227 , PRO B:228
BINDING SITE FOR RESIDUE EDO B 1029
29
DC2
SOFTWARE
HOH E:1122
BINDING SITE FOR RESIDUE EDO E 1030
30
DC3
SOFTWARE
MSE G:115 , HOH G:1033 , PRO H:186 , SER H:224
BINDING SITE FOR RESIDUE EDO H 1031
31
DC4
SOFTWARE
ARG B:109 , HIS B:110 , GLN C:183 , PRO C:186
BINDING SITE FOR RESIDUE EDO B 1032
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2pkha1 (A:109-249)
1b: SCOP_d2pkhb_ (B:)
1c: SCOP_d2pkhc_ (C:)
1d: SCOP_d2pkhd_ (D:)
1e: SCOP_d2pkhe_ (E:)
1f: SCOP_d2pkhf_ (F:)
1g: SCOP_d2pkhg_ (G:)
1h: SCOP_d2pkhh_ (H:)
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Classes
(
)
(
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(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Chorismate lyase-like
(23)
Superfamily
:
Chorismate lyase-like
(23)
Family
:
UTRA domain
(11)
Protein domain
:
Histidine utilization repressor HutC
(1)
Pseudomonas syringae pv. tomato [TaxId: 323]
(1)
1a
d2pkha1
A:109-249
1b
d2pkhb_
B:
1c
d2pkhc_
C:
1d
d2pkhd_
D:
1e
d2pkhe_
E:
1f
d2pkhf_
F:
1g
d2pkhg_
G:
1h
d2pkhh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2pkhB01 (B:108-238)
1b: CATH_2pkhC01 (C:108-238)
1c: CATH_2pkhE01 (E:108-238)
1d: CATH_2pkhH01 (H:108-238)
1e: CATH_2pkhA01 (A:109-238)
1f: CATH_2pkhD01 (D:109-238)
1g: CATH_2pkhF01 (F:109-238)
1h: CATH_2pkhG01 (G:109-238)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Chorismate lyase
(20)
Homologous Superfamily
:
Chorismate lyase
(20)
Tomato str (Pseudomonas syringae pv)
(1)
1a
2pkhB01
B:108-238
1b
2pkhC01
C:108-238
1c
2pkhE01
E:108-238
1d
2pkhH01
H:108-238
1e
2pkhA01
A:109-238
1f
2pkhD01
D:109-238
1g
2pkhF01
F:109-238
1h
2pkhG01
G:109-238
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_UTRA_2pkhH01 (H:108-242)
1b: PFAM_UTRA_2pkhH02 (H:108-242)
1c: PFAM_UTRA_2pkhH03 (H:108-242)
1d: PFAM_UTRA_2pkhH04 (H:108-242)
1e: PFAM_UTRA_2pkhH05 (H:108-242)
1f: PFAM_UTRA_2pkhH06 (H:108-242)
1g: PFAM_UTRA_2pkhH07 (H:108-242)
1h: PFAM_UTRA_2pkhH08 (H:108-242)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Chor_lyase
(11)
Family
:
UTRA
(7)
Pseudomonas syringae pv. tomato str. DC3000
(1)
1a
UTRA-2pkhH01
H:108-242
1b
UTRA-2pkhH02
H:108-242
1c
UTRA-2pkhH03
H:108-242
1d
UTRA-2pkhH04
H:108-242
1e
UTRA-2pkhH05
H:108-242
1f
UTRA-2pkhH06
H:108-242
1g
UTRA-2pkhH07
H:108-242
1h
UTRA-2pkhH08
H:108-242
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