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2PKH
Biol. Unit 1
Info
Asym.Unit (212 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HISTIDINE UTILIZATION REPRESSOR FROM PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000
Authors
:
K. Tan, M. Zhou, S. Clancy, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date
:
17 Apr 07 (Deposition) - 15 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Apc84836, Histidine Utilization Repressor, Pseudomonas Syringae Pv. Tomato Str. Dc3000, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, M. Zhou, S. Clancy, A. Joachimiak
The Crystal Structure Of The C-Terminal Domain Of Histidine Utilization Repressor From Pseudomonas Syringae Pv. Tomato Str. Dc3000.
To Be Published
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Hetero Components
(2, 25)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: BC4 (SOFTWARE)
11: BC5 (SOFTWARE)
12: BC6 (SOFTWARE)
13: BC7 (SOFTWARE)
14: BC8 (SOFTWARE)
15: CC2 (SOFTWARE)
16: CC3 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC7 (SOFTWARE)
19: CC9 (SOFTWARE)
20: DC1 (SOFTWARE)
21: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:1146 , ARG C:246 , TRP D:223
BINDING SITE FOR RESIDUE EDO C 1002
02
AC2
SOFTWARE
GLU D:155 , ARG D:157 , TYR D:178 , ARG D:220 , HOH D:1053 , HOH D:1092
BINDING SITE FOR RESIDUE EDO D 1003
03
AC3
SOFTWARE
HIS A:145 , THR A:173 , HOH A:1064
BINDING SITE FOR RESIDUE EDO A 1004
04
AC4
SOFTWARE
ALA B:127 , ASP B:131 , HOH B:1124 , HOH E:1133 , HOH E:1139
BINDING SITE FOR RESIDUE EDO E 1005
05
AC5
SOFTWARE
VAL D:193
BINDING SITE FOR RESIDUE EDO D 1006
06
AC8
SOFTWARE
MSE A:115 , HOH A:1144 , PRO B:186 , THR B:188 , SER B:224 , GLY B:225
BINDING SITE FOR RESIDUE EDO A 1009
07
AC9
SOFTWARE
GLN B:153 , THR B:176 , HOH B:1086 , HOH B:1147
BINDING SITE FOR RESIDUE EDO B 1010
08
BC2
SOFTWARE
VAL C:114
BINDING SITE FOR RESIDUE EDO C 1012
09
BC3
SOFTWARE
ASP D:210 , GLU D:213 , HOH D:1084 , ARG H:133
BINDING SITE FOR RESIDUE EDO D 1013
10
BC4
SOFTWARE
LEU A:198 , ALA A:199 , GLU A:200 , HOH A:1128
BINDING SITE FOR RESIDUE EDO A 1014
11
BC5
SOFTWARE
LYS D:169 , VAL F:114
BINDING SITE FOR RESIDUE EDO F 1015
12
BC6
SOFTWARE
LYS B:118 , GLU B:120 , HIS B:140 , HOH B:1121 , HOH B:1138 , HOH B:1146
BINDING SITE FOR RESIDUE EDO B 1016
13
BC7
SOFTWARE
ALA C:164 , PRO C:165 , ASP C:166 , TYR C:167 , TYR C:180 , VAL C:184
BINDING SITE FOR RESIDUE EDO C 1017
14
BC8
SOFTWARE
LYS C:205 , GLU G:244 , HOH G:1151 , VAL H:193
BINDING SITE FOR RESIDUE EDO G 1018
15
CC2
SOFTWARE
ILE B:150 , GLN B:208
BINDING SITE FOR RESIDUE EDO B 1021
16
CC3
SOFTWARE
HOH C:1045 , ARG H:240
BINDING SITE FOR RESIDUE EDO H 1022
17
CC5
SOFTWARE
VAL A:114 , MSE A:115 , HOH A:1139
BINDING SITE FOR RESIDUE EDO A 1024
18
CC7
SOFTWARE
ASP B:210 , GLU B:213 , HOH B:1141 , HOH B:1144 , HOH B:1145
BINDING SITE FOR RESIDUE EDO B 1026
19
CC9
SOFTWARE
ARG B:133 , ILE F:209 , ASP F:210 , GLU F:213 , HOH F:1149
BINDING SITE FOR RESIDUE EDO F 1028
20
DC1
SOFTWARE
LYS A:118 , GLU A:119 , LEU B:130 , ASP B:131 , GLN B:227 , PRO B:228
BINDING SITE FOR RESIDUE EDO B 1029
21
DC4
SOFTWARE
ARG B:109 , HIS B:110 , GLN C:183 , PRO C:186
BINDING SITE FOR RESIDUE EDO B 1032
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2pkha1 (A:109-249)
1b: SCOP_d2pkhb_ (B:)
1c: SCOP_d2pkhc_ (C:)
1d: SCOP_d2pkhd_ (D:)
1e: SCOP_d2pkhe_ (E:)
1f: SCOP_d2pkhf_ (F:)
1g: SCOP_d2pkhg_ (G:)
1h: SCOP_d2pkhh_ (H:)
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(
)
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(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Chorismate lyase-like
(23)
Superfamily
:
Chorismate lyase-like
(23)
Family
:
UTRA domain
(11)
Protein domain
:
Histidine utilization repressor HutC
(1)
Pseudomonas syringae pv. tomato [TaxId: 323]
(1)
1a
d2pkha1
A:109-249
1b
d2pkhb_
B:
1c
d2pkhc_
C:
1d
d2pkhd_
D:
1e
d2pkhe_
E:
1f
d2pkhf_
F:
1g
d2pkhg_
G:
1h
d2pkhh_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2pkhB01 (B:108-238)
1b: CATH_2pkhC01 (C:108-238)
1c: CATH_2pkhE01 (E:108-238)
1d: CATH_2pkhH01 (H:108-238)
1e: CATH_2pkhA01 (A:109-238)
1f: CATH_2pkhD01 (D:109-238)
1g: CATH_2pkhF01 (F:109-238)
1h: CATH_2pkhG01 (G:109-238)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Chorismate lyase
(20)
Homologous Superfamily
:
Chorismate lyase
(20)
Tomato str (Pseudomonas syringae pv)
(1)
1a
2pkhB01
B:108-238
1b
2pkhC01
C:108-238
1c
2pkhE01
E:108-238
1d
2pkhH01
H:108-238
1e
2pkhA01
A:109-238
1f
2pkhD01
D:109-238
1g
2pkhF01
F:109-238
1h
2pkhG01
G:109-238
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_UTRA_2pkhH01 (H:108-242)
1b: PFAM_UTRA_2pkhH02 (H:108-242)
1c: PFAM_UTRA_2pkhH03 (H:108-242)
1d: PFAM_UTRA_2pkhH04 (H:108-242)
1e: PFAM_UTRA_2pkhH05 (H:108-242)
1f: PFAM_UTRA_2pkhH06 (H:108-242)
1g: PFAM_UTRA_2pkhH07 (H:108-242)
1h: PFAM_UTRA_2pkhH08 (H:108-242)
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(
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(
)
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(
)
(
)
Clan
:
Chor_lyase
(11)
Family
:
UTRA
(7)
Pseudomonas syringae pv. tomato str. DC3000
(1)
1a
UTRA-2pkhH01
H:108-242
1b
UTRA-2pkhH02
H:108-242
1c
UTRA-2pkhH03
H:108-242
1d
UTRA-2pkhH04
H:108-242
1e
UTRA-2pkhH05
H:108-242
1f
UTRA-2pkhH06
H:108-242
1g
UTRA-2pkhH07
H:108-242
1h
UTRA-2pkhH08
H:108-242
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