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2PK4
Asym. Unit
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Asym.Unit (20 KB)
Biol.Unit 1 (17 KB)
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(1)
Title
:
THE REFINED STRUCTURE OF THE EPSILON-AMINOCAPROIC ACID COMPLEX OF HUMAN PLASMINOGEN KRINGLE
Authors
:
A. Tulinsky, T. -P. Wu
Date
:
18 Jul 91 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase(Serine Protease)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. P. Wu, K. Padmanabhan, A. Tulinsky, A. M. Mulichak
The Refined Structure Of The Epsilon-Aminocaproic Acid Complex Of Human Plasminogen Kringle 4.
Biochemistry V. 30 10589 1991
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 6-AMINOHEXANOIC ACID (ACAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACA
1
Ligand/Ion
6-AMINOHEXANOIC ACID
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: BIN (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:35 , ASP A:55 , ASP A:57 , TRP A:62 , PHE A:64 , ARG A:71 , TRP A:72
BINDING SITE FOR RESIDUE ACA A 100
2
BIN
AUTHOR
HIS A:31 , ARG A:32 , HIS A:33 , GLN A:34 , LYS A:35 , PRO A:54 , ASP A:55 , ALA A:56 , ASP A:57 , LYS A:58 , TRP A:62 , CYS A:63 , PHE A:64 , ARG A:71 , TRP A:72 , GLU A:73 , TYR A:74
BINDING SITE
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016290 (R32W, chain A, )
2: VAR_011780 (K79I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016290
R
408
W
PLMN_HUMAN
Polymorphism
4252119
A
R
32
W
2
UniProt
VAR_011780
K
453
I
PLMN_HUMAN
Polymorphism
1804181
A
K
79
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: KRINGLE_2 (-|-|-|A:0-80|-)
2: KRINGLE_1 (-|-|-|A:50-63|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KRINGLE_2
PS50070
Kringle domain profile.
PLMN_HUMAN
102-181
184-262
274-352
376-454
480-560
1
-
-
-
A:0-80
-
2
KRINGLE_1
PS00021
Kringle domain signature.
PLMN_HUMAN
151-164
233-245
323-335
425-437
530-543
1
-
-
-
A:50-63
-
[
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]
Exons
(2, 2)
Info
All Exons
Exon 1.10 (A:-1-44 (gaps))
Exon 1.11c (A:44-80 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9/1.10
2: Boundary 1.10/1.11c
3: Boundary 1.11c/1.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308192
1b
ENSE00001900502
chr6:
161123274-161123385
112
PLMN_HUMAN
1-17
17
0
-
-
1.2d
ENST00000308192
2d
ENSE00002186994
chr6:
161127439-161127574
136
PLMN_HUMAN
17-62
46
0
-
-
1.3a
ENST00000308192
3a
ENSE00002162767
chr6:
161128732-161128838
107
PLMN_HUMAN
62-98
37
0
-
-
1.4a
ENST00000308192
4a
ENSE00002147931
chr6:
161132109-161132223
115
PLMN_HUMAN
98-136
39
0
-
-
1.5b
ENST00000308192
5b
ENSE00002160428
chr6:
161134018-161134157
140
PLMN_HUMAN
136-183
48
0
-
-
1.6
ENST00000308192
6
ENSE00002153394
chr6:
161135826-161135946
121
PLMN_HUMAN
183-223
41
0
-
-
1.7
ENST00000308192
7
ENSE00002185478
chr6:
161137677-161137795
119
PLMN_HUMAN
223-263
41
0
-
-
1.8
ENST00000308192
8
ENSE00002162125
chr6:
161139326-161139488
163
PLMN_HUMAN
263-317
55
0
-
-
1.9
ENST00000308192
9
ENSE00002174772
chr6:
161139725-161139870
146
PLMN_HUMAN
317-366
50
0
-
-
1.10
ENST00000308192
10
ENSE00002171287
chr6:
161143440-161143599
160
PLMN_HUMAN
366-419
54
1
A:-1-44 (gaps)
46
1.11c
ENST00000308192
11c
ENSE00002163078
chr6:
161152083-161152264
182
PLMN_HUMAN
419-480
62
1
A:44-80 (gaps)
37
1.12b
ENST00000308192
12b
ENSE00002160674
chr6:
161152777-161152925
149
PLMN_HUMAN
480-529
50
0
-
-
1.13
ENST00000308192
13
ENSE00002175196
chr6:
161155027-161155120
94
PLMN_HUMAN
530-561
32
0
-
-
1.14
ENST00000308192
14
ENSE00002152595
chr6:
161157919-161158039
121
PLMN_HUMAN
561-601
41
0
-
-
1.15b
ENST00000308192
15b
ENSE00002177616
chr6:
161159570-161159644
75
PLMN_HUMAN
601-626
26
0
-
-
1.16
ENST00000308192
16
ENSE00002172545
chr6:
161160100-161160240
141
PLMN_HUMAN
626-673
48
0
-
-
1.17b
ENST00000308192
17b
ENSE00002178747
chr6:
161162343-161162449
107
PLMN_HUMAN
673-709
37
0
-
-
1.18b
ENST00000308192
18b
ENSE00002181703
chr6:
161173147-161173292
146
PLMN_HUMAN
709-757
49
0
-
-
1.19b
ENST00000308192
19b
ENSE00001864790
chr6:
161173932-161174338
407
PLMN_HUMAN
758-810
53
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pk4a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Kringle-like
(68)
Superfamily
:
Kringle-like
(68)
Family
:
Kringle modules
(54)
Protein domain
:
Plasminogen
(20)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2pk4a_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2pk4A00 (A:-1-80)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Human (Homo sapiens)
(37)
1a
2pk4A00
A:-1-80
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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