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2PJU
Biol. Unit 2
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Asym.Unit (131 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROPIONATE CATABOLISM OPERON REGULATORY PROTEIN PRPR
Authors
:
U. A. Ramagopal, R. Toro, M. Gilmore, B. Wu, J. Koss, C. Groshong, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
16 Apr 07 (Deposition) - 22 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Structural Genomics, Prpr, Transcriptional Regulation, Psi- 2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. A. Ramagopal, R. Toro, M. Gilmore, B. Wu, J. Koss, C. Groshong, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Propionate Catabolism Operon Regulatory Protein Prpr
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
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PROSITE Patterns/Profiles
(1, 1)
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1: SIGMA54_INTERACT_4 (D:216-220)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIGMA54_INTERACT_4
PS50045
Sigma-54 interaction domain profile.
PRPR_ECOLI
218-460
1
D:216-220
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pjua1 (A:11-196)
1b: SCOP_d2pjub_ (B:)
1c: SCOP_d2pjuc_ (C:)
1d: SCOP_d2pjud1 (D:11-196)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
PrpR receptor domain-like
(1)
Family
:
PrpR receptor domain-like
(1)
Protein domain
:
Propionate catabolism operon regulatory protein PrpR
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d2pjua1
A:11-196
1b
d2pjub_
B:
1c
d2pjuc_
C:
1d
d2pjud1
D:11-196
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_2pjuC01 (C:11-88,C:177-198)
1b: CATH_2pjuB01 (B:11-88,B:177-197)
1c: CATH_2pjuA01 (A:11-88,A:177-196)
1d: CATH_2pjuD01 (D:11-88)
2a: CATH_2pjuA02 (A:89-176)
2b: CATH_2pjuC02 (C:89-176)
2c: CATH_2pjuD02 (D:89-177)
2d: CATH_2pjuB02 (B:89-176)
3a: CATH_2pjuD03 (D:178-223)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Escherichia coli. Organism_taxid: 562. Strain: k12, mg1655.
(1)
1a
2pjuC01
C:11-88,C:177-198
1b
2pjuB01
B:11-88,B:177-197
1c
2pjuA01
A:11-88,A:177-196
1d
2pjuD01
D:11-88
Homologous Superfamily
:
PrpR receptor domain-like
(2)
Escherichia coli. Organism_taxid: 562. Strain: k12, mg1655.
(1)
2a
2pjuA02
A:89-176
2b
2pjuC02
C:89-176
2c
2pjuD02
D:89-177
2d
2pjuB02
B:89-176
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
Escherichia coli. Organism_taxid: 562. Strain: k12, mg1655.
(1)
3a
2pjuD03
D:178-223
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PrpR_N_2pjuD01 (D:28-202)
1b: PFAM_PrpR_N_2pjuD02 (D:28-202)
1c: PFAM_PrpR_N_2pjuD03 (D:28-202)
1d: PFAM_PrpR_N_2pjuD04 (D:28-202)
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Clan
:
no clan defined [family: PrpR_N]
(2)
Family
:
PrpR_N
(2)
Escherichia coli (strain K12)
(1)
1a
PrpR_N-2pjuD01
D:28-202
1b
PrpR_N-2pjuD02
D:28-202
1c
PrpR_N-2pjuD03
D:28-202
1d
PrpR_N-2pjuD04
D:28-202
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Asym.Unit (131 KB)
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