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2PI8
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (225 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI MLTA WITH BOUND CHITOHEXAOSE
Authors
:
K. E. Van Straaten, T. R. M. Barends, B. W. Dijkstra, A. M. W. H. Thunniss
Date
:
13 Apr 07 (Deposition) - 08 May 07 (Release) - 13 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Double-Psi Beta-Barrel; Protein-Sugar Complex; Lytic Transglycosylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. E. Van Straaten, T. R. M. Barends, B. W. Dijkstra, A. M. W. H. Thunnissen
Structure Of Escherichia Coli Lytic Transglycosylase Mlta With Bound Chitohexaose: Implications For Peptidoglycan Binding And Cleavage
J. Biol. Chem. V. 282 21197 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 62)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
32
Mod. Amino Acid
SELENOMETHIONINE
2
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
6
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:180 , ALA A:181 , PO4 A:699 , NAG A:902
BINDING SITE FOR RESIDUE NAG A 901
02
AC2
SOFTWARE
TYR A:180 , VAL A:298 , NAG A:901 , NAG A:903 , HOH A:1165
BINDING SITE FOR RESIDUE NAG A 902
03
AC3
SOFTWARE
GLY A:163 , SER A:164 , GLY A:246 , ASP A:297 , VAL A:298 , NAG A:902 , NAG A:904
BINDING SITE FOR RESIDUE NAG A 903
04
AC4
SOFTWARE
TYR A:101 , VAL A:161 , GLN A:162 , TYR A:188 , ALA A:259 , ASP A:297 , VAL A:298 , NAG A:903 , NAG A:905 , HOH A:1045
BINDING SITE FOR RESIDUE NAG A 904
05
AC5
SOFTWARE
GLY A:100 , TYR A:101 , VAL A:161 , GLN A:162 , TYR A:188 , MSE A:208 , NAG A:904 , NAG A:906
BINDING SITE FOR RESIDUE NAG A 905
06
AC6
SOFTWARE
SER A:190 , GLY A:192 , MSE A:206 , ALA A:321 , GLY A:322 , NAG A:905
BINDING SITE FOR RESIDUE NAG A 906
07
AC7
SOFTWARE
SER B:179 , TYR B:180 , ALA B:181 , LYS B:237 , PO4 B:696 , NAG B:912
BINDING SITE FOR RESIDUE NAG B 911
08
AC8
SOFTWARE
TYR B:180 , NAG B:911 , NAG B:913 , HOH B:1064
BINDING SITE FOR RESIDUE NAG B 912
09
AC9
SOFTWARE
GLY B:163 , SER B:164 , GLY B:246 , ALA B:247 , ASP B:297 , VAL B:298 , NAG B:912 , NAG B:914 , HOH B:1182
BINDING SITE FOR RESIDUE NAG B 913
10
BC1
SOFTWARE
TYR B:101 , VAL B:161 , GLN B:162 , ALA B:259 , ASP B:297 , VAL B:298 , NAG B:913 , NAG B:915 , HOH B:1006
BINDING SITE FOR RESIDUE NAG B 914
11
BC2
SOFTWARE
GLY B:100 , TYR B:101 , VAL B:161 , GLN B:162 , MSE B:208 , ALA B:301 , NAG B:914 , NAG B:916 , HOH B:1042
BINDING SITE FOR RESIDUE NAG B 915
12
BC3
SOFTWARE
THR B:99 , GLY B:100 , ALA B:321 , GLY B:322 , TRP B:323 , TYR B:324 , ASN B:325 , NAG B:915
BINDING SITE FOR RESIDUE NAG B 916
13
BC4
SOFTWARE
ALA C:181 , LYS C:237 , PO4 C:697 , NAG C:922
BINDING SITE FOR RESIDUE NAG C 921
14
BC5
SOFTWARE
TYR C:180 , ALA C:247 , NAG C:921 , NAG C:923
BINDING SITE FOR RESIDUE NAG C 922
15
BC6
SOFTWARE
GLY C:163 , SER C:164 , TYR C:180 , GLY C:246 , ALA C:247 , ASP C:297 , VAL C:298 , NAG C:922 , NAG C:924
BINDING SITE FOR RESIDUE NAG C 923
16
BC7
SOFTWARE
TYR C:101 , VAL C:161 , GLN C:162 , ALA C:259 , ASP C:297 , VAL C:298 , NAG C:923 , NAG C:925 , HOH C:1191
BINDING SITE FOR RESIDUE NAG C 924
17
BC8
SOFTWARE
GLY C:100 , TYR C:101 , VAL C:161 , GLN C:162 , MSE C:208 , ALA C:301 , NAG C:924 , NAG C:926
BINDING SITE FOR RESIDUE NAG C 925
18
BC9
SOFTWARE
THR C:99 , SER C:190 , MSE C:206 , MSE C:208 , ALA C:321 , GLY C:322 , TYR C:324 , ASN C:325 , NAG C:925
BINDING SITE FOR RESIDUE NAG C 926
19
CC1
SOFTWARE
TYR D:180 , ALA D:181 , PO4 D:698 , NAG D:932
BINDING SITE FOR RESIDUE NAG D 931
20
CC2
SOFTWARE
TYR D:180 , ALA D:247 , VAL D:298 , NAG D:931 , NAG D:933 , HOH D:1018 , HOH D:1074
BINDING SITE FOR RESIDUE NAG D 932
21
CC3
SOFTWARE
GLY D:163 , SER D:164 , GLY D:246 , ALA D:247 , ASP D:297 , VAL D:298 , NAG D:932 , NAG D:934 , HOH D:1074
BINDING SITE FOR RESIDUE NAG D 933
22
CC4
SOFTWARE
TYR D:101 , VAL D:161 , GLN D:162 , ALA D:259 , ASP D:297 , VAL D:298 , NAG D:933 , NAG D:935 , HOH D:1192
BINDING SITE FOR RESIDUE NAG D 934
23
CC5
SOFTWARE
GLY D:100 , TYR D:101 , VAL D:161 , GLN D:162 , ALA D:301 , NAG D:934 , NAG D:936 , HOH D:1192
BINDING SITE FOR RESIDUE NAG D 935
24
CC6
SOFTWARE
THR D:99 , SER D:190 , ILE D:191 , GLY D:192 , ALA D:321 , GLY D:322 , TYR D:324 , ASN D:325 , NAG D:935
BINDING SITE FOR RESIDUE NAG D 936
25
CC7
SOFTWARE
LYS A:237 , GLN A:239 , NAG A:901 , HOH A:1059 , LYS D:237 , HOH D:1156
BINDING SITE FOR RESIDUE PO4 A 699
26
CC8
SOFTWARE
LYS B:237 , GLN B:239 , NAG B:911 , HOH B:1125 , LYS C:237 , PO4 C:697
BINDING SITE FOR RESIDUE PO4 B 696
27
CC9
SOFTWARE
LYS B:237 , PO4 B:696 , LYS C:237 , GLN C:239 , NAG C:921
BINDING SITE FOR RESIDUE PO4 C 697
28
DC1
SOFTWARE
ARG C:122 , TYR C:145
BINDING SITE FOR RESIDUE PO4 C 701
29
DC2
SOFTWARE
LYS A:237 , LYS D:237 , GLN D:239 , NAG D:931
BINDING SITE FOR RESIDUE PO4 D 698
30
DC3
SOFTWARE
ARG D:122 , TYR D:145 , HOH D:1102
BINDING SITE FOR RESIDUE PO4 D 700
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2pi8a1 (A:3-237)
1b: SCOP_d2pi8b_ (B:)
1c: SCOP_d2pi8c_ (C:)
1d: SCOP_d2pi8d_ (D:)
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double psi beta-barrel
(111)
Superfamily
:
Barwin-like endoglucanases
(23)
Family
:
MLTA-like
(8)
Protein domain
:
Membrane-bound lytic murein transglycosylase A, MLTA
(8)
Escherichia coli [TaxId: 562]
(5)
1a
d2pi8a1
A:3-237
1b
d2pi8b_
B:
1c
d2pi8c_
C:
1d
d2pi8d_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_3D_2pi8D01 (D:256-334)
1b: PFAM_3D_2pi8D02 (D:256-334)
1c: PFAM_3D_2pi8D03 (D:256-334)
1d: PFAM_3D_2pi8D04 (D:256-334)
2a: PFAM_MltA_2pi8D05 (D:105-237)
2b: PFAM_MltA_2pi8D06 (D:105-237)
2c: PFAM_MltA_2pi8D07 (D:105-237)
2d: PFAM_MltA_2pi8D08 (D:105-237)
View:
Select:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
DPBB
(9)
Family
:
3D
(3)
Escherichia coli (strain K12)
(3)
1a
3D-2pi8D01
D:256-334
1b
3D-2pi8D02
D:256-334
1c
3D-2pi8D03
D:256-334
1d
3D-2pi8D04
D:256-334
Clan
:
no clan defined [family: MltA]
(3)
Family
:
MltA
(3)
Escherichia coli (strain K12)
(3)
2a
MltA-2pi8D05
D:105-237
2b
MltA-2pi8D06
D:105-237
2c
MltA-2pi8D07
D:105-237
2d
MltA-2pi8D08
D:105-237
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Asym.Unit (235 KB)
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