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Getting 'Exon' information from database.
2PFI
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CYTOPLASMIC DOMAIN OF THE HUMAN CHLORIDE CHANNEL CLC-KA
Authors
:
S. Markovic, R. Dutzler
Date
:
05 Apr 07 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Cystathionine Beta Synthetase (Cbs) Domains Containing Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Markovic, R. Dutzler
The Structure Of The Cytoplasmic Domain Of The Chloride Channel Clc-Ka Reveals A Conserved Interaction Interface.
Structure V. 15 715 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: IODIDE ION (IODa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
IOD
1
Ligand/Ion
IODIDE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:687
BINDING SITE FOR RESIDUE IOD A 501
2
AC2
SOFTWARE
TRP B:670 , ILE B:677
BINDING SITE FOR RESIDUE CL B 503
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_061095 (P683L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_061095
P
683
L
CLCKA_HUMAN
Polymorphism
12746751
A/B
P
683
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CBS (A:551-605,B:551-608|A:626-684,B:62...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CBS
PS51371
CBS domain profile.
CLCKA_HUMAN
551-609
626-684
4
A:551-605
B:551-608
A:626-684
B:626-684
[
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Exons
(5, 10)
Info
All Exons
Exon 1.22 (A:542-586 | B:542-586)
Exon 1.23 (A:586-615 (gaps) | B:586-615 (gaps...)
Exon 1.24a (A:616-643 | B:616-643)
Exon 1.25 (A:644-672 | B:644-672)
Exon 1.26b (A:673-687 | B:673-687)
View:
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Label:
All Exon Boundaries
1: Boundary 1.21/1.22
2: Boundary 1.22/1.23
3: Boundary 1.23/1.24a
4: Boundary 1.24a/1.25
5: Boundary 1.25/1.26b
6: Boundary 1.26b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6d
ENST00000331433
6d
ENSE00001932203
chr1:
16348547-16348558
12
CLCKA_HUMAN
-
0
0
-
-
1.7
ENST00000331433
7
ENSE00002142746
chr1:
16349108-16349214
107
CLCKA_HUMAN
1-34
34
0
-
-
1.8
ENST00000331433
8
ENSE00001792243
chr1:
16350295-16350423
129
CLCKA_HUMAN
34-77
44
0
-
-
1.9a
ENST00000331433
9a
ENSE00001687047
chr1:
16351258-16351386
129
CLCKA_HUMAN
77-120
44
0
-
-
1.10a
ENST00000331433
10a
ENSE00001318549
chr1:
16352603-16352742
140
CLCKA_HUMAN
120-166
47
0
-
-
1.11b
ENST00000331433
11b
ENSE00001677163
chr1:
16353031-16353108
78
CLCKA_HUMAN
167-192
26
0
-
-
1.12
ENST00000331433
12
ENSE00001670784
chr1:
16353192-16353270
79
CLCKA_HUMAN
193-219
27
0
-
-
1.14
ENST00000331433
14
ENSE00001698312
chr1:
16353805-16353930
126
CLCKA_HUMAN
219-261
43
0
-
-
1.15
ENST00000331433
15
ENSE00001766047
chr1:
16354316-16354400
85
CLCKA_HUMAN
261-289
29
0
-
-
1.16
ENST00000331433
16
ENSE00001302130
chr1:
16354513-16354614
102
CLCKA_HUMAN
289-323
35
0
-
-
1.17b
ENST00000331433
17b
ENSE00001759246
chr1:
16355256-16355340
85
CLCKA_HUMAN
323-351
29
0
-
-
1.18
ENST00000331433
18
ENSE00001714023
chr1:
16355621-16355794
174
CLCKA_HUMAN
352-409
58
0
-
-
1.19
ENST00000331433
19
ENSE00001612488
chr1:
16356226-16356295
70
CLCKA_HUMAN
410-433
24
0
-
-
1.20
ENST00000331433
20
ENSE00001676808
chr1:
16356460-16356570
111
CLCKA_HUMAN
433-470
38
0
-
-
1.21
ENST00000331433
21
ENSE00001766307
chr1:
16356956-16357169
214
CLCKA_HUMAN
470-541
72
0
-
-
1.22
ENST00000331433
22
ENSE00001293563
chr1:
16358205-16358338
134
CLCKA_HUMAN
541-586
46
2
A:542-586
B:542-586
45
45
1.23
ENST00000331433
23
ENSE00001617962
chr1:
16358698-16358786
89
CLCKA_HUMAN
586-615
30
2
A:586-615 (gaps)
B:586-615 (gaps)
30
30
1.24a
ENST00000331433
24a
ENSE00001718331
chr1:
16358938-16359021
84
CLCKA_HUMAN
616-643
28
2
A:616-643
B:616-643
28
28
1.25
ENST00000331433
25
ENSE00001784874
chr1:
16359665-16359751
87
CLCKA_HUMAN
644-672
29
2
A:644-672
B:644-672
29
29
1.26b
ENST00000331433
26b
ENSE00001800918
chr1:
16360106-16360545
440
CLCKA_HUMAN
673-687
15
2
A:673-687
B:673-687
15
15
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_CBS_2pfiB01 (B:623-679)
1b: PFAM_CBS_2pfiB02 (B:623-679)
1c: PFAM_CBS_2pfiB03 (B:623-679)
1d: PFAM_CBS_2pfiB04 (B:623-679)
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)
(
)
Clan
:
no clan defined [family: CBS]
(51)
Family
:
CBS
(51)
Homo sapiens (Human)
(7)
1a
CBS-2pfiB01
B:623-679
1b
CBS-2pfiB02
B:623-679
1c
CBS-2pfiB03
B:623-679
1d
CBS-2pfiB04
B:623-679
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Asym.Unit (57 KB)
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