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Getting 'Biological Unit' information from database.
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2PFH
Asym. Unit
Info
Asym.Unit (160 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
COMPLEX OF ALDOSE REDUCTASE WITH NADP+ AND SIMALTANEOUSLY BOUND COMPETETIVE INHIBITORS FIDARESTAT AND IDD594. CONCENTRATION OF FIDARESTAT IN SOAKING SOLUTION IS LESS THAN CONCENTRATION OF IDD594.
Authors
:
T. Petrova, I. Hazemann, A. Cousido, A. Mitschler, S. Ginell, A. Joachi A. Podjarny
Date
:
05 Apr 07 (Deposition) - 17 Apr 07 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, Nadp, Idd594, Fidarestat
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Cousido-Siah, T. Petrova, I. Hazemann, A. Mitschler, F. X. Ruiz, E. Howard, S. Ginell, C. Atmanene, A. Van Dorsselaer, S. Sanglier-Cianferani, A. Joachimiak, A. Podjarny
Crystal Packing Modifies Ligand Binding Affinity: The Case Of Aldose Reductase.
Proteins V. 80 2552 2012
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: CHLORIDE ION (CLa)
3a: (2S,4S)-2-AMINOFORMYL-6-FLUORO-SPI... (FIDa)
4a: IDD594 (LDTa)
5a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
CL
1
Ligand/Ion
CHLORIDE ION
3
FID
1
Ligand/Ion
(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE
4
LDT
1
Ligand/Ion
IDD594
5
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:45 , HIS A:46 , VAL A:47 , LYS A:77 , TRP A:79 , HIS A:110
BINDING SITE FOR RESIDUE CL A 2000
2
AC2
SOFTWARE
GLY A:18 , THR A:19 , TRP A:20 , LYS A:21 , ASP A:43 , TYR A:48 , LYS A:77 , HIS A:110 , SER A:159 , ASN A:160 , GLN A:183 , TYR A:209 , SER A:210 , PRO A:211 , LEU A:212 , GLY A:213 , SER A:214 , PRO A:215 , ASP A:216 , ALA A:245 , ILE A:260 , PRO A:261 , LYS A:262 , SER A:263 , VAL A:264 , THR A:265 , ARG A:268 , GLU A:271 , ASN A:272 , LDT A:320 , FID A:321 , HOH A:3121 , HOH A:3151 , HOH A:3152 , HOH A:3185 , HOH A:3424 , HOH A:3541 , HOH A:3543
BINDING SITE FOR RESIDUE NDP A 318
3
AC3
SOFTWARE
TRP A:20 , VAL A:47 , TYR A:48 , HIS A:110 , TRP A:111 , THR A:113 , CYS A:298 , ALA A:299 , LEU A:300 , NDP A:318 , HOH A:3681
BINDING SITE FOR RESIDUE LDT A 320
4
AC4
SOFTWARE
TRP A:20 , VAL A:47 , TYR A:48 , TRP A:79 , HIS A:110 , TRP A:111 , TRP A:219 , CYS A:298 , ALA A:299 , LEU A:300 , NDP A:318 , HOH A:3181 , HOH A:3679 , HOH A:3681
BINDING SITE FOR RESIDUE FID A 321
5
AC5
SOFTWARE
ASN A:162 , HIS A:163 , LYS A:194 , LEU A:195 , HOH A:3001 , HOH A:3002 , HOH A:3017 , HOH A:3018 , HOH A:3115 , HOH A:3117 , HOH A:3277 , HOH A:3582 , HOH A:3625 , HOH A:3652 , HOH A:3682
BINDING SITE FOR RESIDUE CIT A 400
6
AC6
SOFTWARE
GLN A:49 , ASN A:50 , GLU A:51 , ASN A:52 , GLU A:53 , LYS A:94 , ASP A:98 , HOH A:3004 , HOH A:3005 , HOH A:3006 , HOH A:3007 , HOH A:3010 , HOH A:3032 , HOH A:3041 , HOH A:3530 , HOH A:3531 , HOH A:3591 , HOH A:3633 , HOH A:3684 , HOH A:3685
BINDING SITE FOR RESIDUE CIT A 450
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014743 (I14F, chain A, )
2: VAR_014744 (H41L, chain A, )
3: VAR_014745 (L72V, chain A, )
4: VAR_048213 (K89E, chain A, )
5: VAR_014746 (G203S, chain A, )
6: VAR_014747 (T287I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014743
I
15
F
ALDR_HUMAN
Polymorphism
5054
A
I
14
F
2
UniProt
VAR_014744
H
42
L
ALDR_HUMAN
Polymorphism
5056
A
H
41
L
3
UniProt
VAR_014745
L
73
V
ALDR_HUMAN
Polymorphism
5057
A
L
72
V
4
UniProt
VAR_048213
K
90
E
ALDR_HUMAN
Polymorphism
2229542
A
K
89
E
5
UniProt
VAR_014746
G
204
S
ALDR_HUMAN
Polymorphism
5061
A
G
203
S
6
UniProt
VAR_014747
T
288
I
ALDR_HUMAN
Polymorphism
5062
A
T
287
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ALDOKETO_REDUCTASE_1 (A:38-55)
2: ALDOKETO_REDUCTASE_2 (A:144-161)
3: ALDOKETO_REDUCTASE_3 (A:260-275)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOKETO_REDUCTASE_1
PS00798
Aldo/keto reductase family signature 1.
ALDR_HUMAN
39-56
1
A:38-55
2
ALDOKETO_REDUCTASE_2
PS00062
Aldo/keto reductase family signature 2.
ALDR_HUMAN
145-162
1
A:144-161
3
ALDOKETO_REDUCTASE_3
PS00063
Aldo/keto reductase family putative active site signature.
ALDR_HUMAN
261-276
1
A:260-275
[
close PROSITE info
]
Exons
(10, 10)
Info
All Exons
Exon 1.1d (A:0-21)
Exon 1.2b (A:22-77)
Exon 1.4b (A:78-116)
Exon 1.5a (A:117-142)
Exon 1.5i (A:143-183)
Exon 1.6 (A:184-219)
Exon 1.7a (A:219-246)
Exon 1.7i (A:247-274)
Exon 1.8a (A:275-302)
Exon 1.9d (A:302-313)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1d
02: Boundary 1.1d/1.2b
03: Boundary 1.2b/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.5i
06: Boundary 1.5i/1.6
07: Boundary 1.6/1.7a
08: Boundary 1.7a/1.7i
09: Boundary 1.7i/1.8a
10: Boundary 1.8a/1.9d
11: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000285930
1d
ENSE00001930160
chr7:
134143894-134143749
146
ALDR_HUMAN
1-22
22
1
A:0-21
22
1.2b
ENST00000285930
2b
ENSE00001803238
chr7:
134136505-134136338
168
ALDR_HUMAN
23-78
56
1
A:22-77
56
1.4b
ENST00000285930
4b
ENSE00001325879
chr7:
134135654-134135538
117
ALDR_HUMAN
79-117
39
1
A:78-116
39
1.5a
ENST00000285930
5a
ENSE00001175544
chr7:
134134549-134134472
78
ALDR_HUMAN
118-143
26
1
A:117-142
26
1.5i
ENST00000285930
5i
ENSE00001752942
chr7:
134133871-134133749
123
ALDR_HUMAN
144-184
41
1
A:143-183
41
1.6
ENST00000285930
6
ENSE00001175532
chr7:
134133245-134133139
107
ALDR_HUMAN
185-220
36
1
A:184-219
36
1.7a
ENST00000285930
7a
ENSE00001625579
chr7:
134132813-134132732
82
ALDR_HUMAN
220-247
28
1
A:219-246
28
1.7i
ENST00000285930
7i
ENSE00001795277
chr7:
134132133-134132050
84
ALDR_HUMAN
248-275
28
1
A:247-274
28
1.8a
ENST00000285930
8a
ENSE00001675790
chr7:
134130072-134129990
83
ALDR_HUMAN
276-303
28
1
A:275-302
28
1.9d
ENST00000285930
9d
ENSE00001174667
chr7:
134127522-134127127
396
ALDR_HUMAN
303-316
14
1
A:302-313
12
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pfha_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
NAD(P)-linked oxidoreductase
(286)
Family
:
Aldo-keto reductases (NADP)
(251)
Protein domain
:
Aldose reductase (aldehyde reductase)
(107)
Human (Homo sapiens) [TaxId: 9606]
(96)
1a
d2pfha_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2pfhA00 (A:0-313)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
NADP-dependent oxidoreductase
(181)
Human (Homo sapiens)
(116)
1a
2pfhA00
A:0-313
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Aldo_ket_red_2pfhA01 (A:14-293)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Aldo_ket_red]
(94)
Family
:
Aldo_ket_red
(94)
Homo sapiens (Human)
(60)
1a
Aldo_ket_red-2pfhA01
A:14-293
[
close Pfam info
]
Atom Selection
(currently selected atoms:
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)
Protein
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Sidechain
Hetero
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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