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2PFG
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CBR1 IN COMPLEX WITH BIGF2.
Authors
:
D. Rauh, R. L. Bateman, K. M. Shokat
Date
:
04 Apr 07 (Deposition) - 25 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.54
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glutathione, Macro Molecule, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. Bateman, D. Rauh, K. M. Shokat
Glutathione Traps Formaldehyde By Formation Of A Bicyclo[4. 4. 1]Undecane Adduct.
Org. Biomol. Chem. V. 5 3363 2007
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: (5R,10S)-5-{[(CARBOXYMETHYL)AMINO]... (DDDa)
3a: GLYCEROL (GOLa)
4a: S-(HYDROXYMETHYL)-L-CYSTEINE (M0Ha)
5a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DDD
1
Ligand/Ion
(5R,10S)-5-{[(CARBOXYMETHYL)AMINO]CARBONYL}-7-OXO-3-THIA-1,6-DIAZABICYCLO[4.4.1]UNDECANE-10-CARBOXYLICACID
3
GOL
1
Ligand/Ion
GLYCEROL
4
M0H
1
Mod. Amino Acid
S-(HYDROXYMETHYL)-L-CYSTEINE
5
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_059053 (V87I, chain A, )
2: VAR_031706 (P130S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_059053
V
88
I
CBR1_HUMAN
Polymorphism
1143663
A
V
87
I
2
UniProt
VAR_031706
P
131
S
CBR1_HUMAN
Polymorphism
41557318
A
P
130
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:180-208)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
CBR1_HUMAN
181-209
1
A:180-208
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Exons
(3, 3)
Info
All Exons
Exon 1.1a (A:3-96)
Exon 1.2a (A:96-132)
Exon 1.3c (A:132-276)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3c
4: Boundary 1.3c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290349
1a
ENSE00002172104
chr21:
37442239-37442702
464
CBR1_HUMAN
1-97
97
1
A:3-96
94
1.2a
ENST00000290349
2a
ENSE00001044165
chr21:
37443248-37443355
108
CBR1_HUMAN
97-133
37
1
A:96-132
37
1.3c
ENST00000290349
3c
ENSE00001044162
chr21:
37444744-37445464
721
CBR1_HUMAN
133-277
145
1
A:132-276
145
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pfga_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
(6)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2pfga_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2pfgA00 (A:3-276)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
2pfgA00
A:3-276
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_adh_short_2pfgA01 (A:5-150)
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Clans
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short
(92)
Homo sapiens (Human)
(21)
1a
adh_short-2pfgA01
A:5-150
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Asymmetric Unit 1
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