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2PF6
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
LUTHERAN GLYCOPROTEIN, N-TERMINAL DOMAINS 1 AND 2
Authors
:
N. Burton, R. L. Brady
Date
:
04 Apr 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Immunoglobulin Superfamily. Cell Adhesion. , Cell Adhesion
(Keyword Search:
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Reference
:
T. J. Mankelow, N. Burton, F. O. Stefansdottir, F. A. Spring, S. F. Parsons, J. S. Pedersen, C. L. Oliveira, D. Lammie, T. Wess, N. Mohandas, J. A. Chasis, R. L. Brady, D. J. Anstee
The Laminin 511/521-Binding Site On The Lutheran Blood Grou Glycoprotein Is Located At The Flexible Junction Of Ig Domains 2 And 3.
Blood V. 110 3398 2007
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021348 (R46H, chain A/B, )
2: VAR_021349 (V165I, chain A/B, )
3: VAR_021350 (M173K, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021348
R
77
H
BCAM_HUMAN
Polymorphism
28399653
A/B
R
46
H
2
UniProt
VAR_021349
V
196
I
BCAM_HUMAN
Polymorphism
28399654
A/B
V
165
I
3
UniProt
VAR_021350
M
204
K
BCAM_HUMAN
Polymorphism
28399656
A/B
M
173
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 12)
Info
All Exons
Exon 1.2 (A:1-37 | B:1-37)
Exon 1.3 (A:38-114 | B:38-114)
Exon 1.4 (A:114-137 | B:114-137)
Exon 1.5 (A:138-170 | B:138-170)
Exon 1.6 (A:170-231 | B:170-231)
Exon 1.7 (A:231-231 | B:231-231)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000270233
1
ENSE00000861690
chr19:
45312338-45312463
126
BCAM_HUMAN
1-28
28
0
-
-
1.2
ENST00000270233
2
ENSE00001159684
chr19:
45314482-45314603
122
BCAM_HUMAN
28-68
41
2
A:1-37
B:1-37
37
37
1.3
ENST00000270233
3
ENSE00001159678
chr19:
45315420-45315648
229
BCAM_HUMAN
69-145
77
2
A:38-114
B:38-114
77
77
1.4
ENST00000270233
4
ENSE00001159674
chr19:
45315735-45315805
71
BCAM_HUMAN
145-168
24
2
A:114-137
B:114-137
24
24
1.5
ENST00000270233
5
ENSE00001159669
chr19:
45316507-45316603
97
BCAM_HUMAN
169-201
33
2
A:138-170
B:138-170
33
33
1.6
ENST00000270233
6
ENSE00001159665
chr19:
45316695-45316877
183
BCAM_HUMAN
201-262
62
2
A:170-231
B:170-231
62
62
1.7
ENST00000270233
7
ENSE00001159659
chr19:
45317409-45317545
137
BCAM_HUMAN
262-307
46
2
A:231-231
B:231-231
1
1
1.8
ENST00000270233
8
ENSE00001159653
chr19:
45317861-45318017
157
BCAM_HUMAN
308-360
53
0
-
-
1.9
ENST00000270233
9
ENSE00000953044
chr19:
45321779-45321894
116
BCAM_HUMAN
360-398
39
0
-
-
1.10
ENST00000270233
10
ENSE00000953045
chr19:
45321998-45322139
142
BCAM_HUMAN
399-446
48
0
-
-
1.11
ENST00000270233
11
ENSE00000953046
chr19:
45322313-45322449
137
BCAM_HUMAN
446-491
46
0
-
-
1.12
ENST00000270233
12
ENSE00000953047
chr19:
45322603-45322747
145
BCAM_HUMAN
492-540
49
0
-
-
1.13a
ENST00000270233
13a
ENSE00000953048
chr19:
45322839-45322983
145
BCAM_HUMAN
540-588
49
0
-
-
1.14
ENST00000270233
14
ENSE00000953049
chr19:
45323962-45324079
118
BCAM_HUMAN
588-627
40
0
-
-
1.15
ENST00000270233
15
ENSE00001424009
chr19:
45324173-45324677
505
BCAM_HUMAN
628-628
1
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_C2_set_2_2pf6B01 (B:119-217)
1b: PFAM_C2_set_2_2pf6B02 (B:119-217)
2a: PFAM_Ig_2_2pf6B03 (B:1-112)
2b: PFAM_Ig_2_2pf6B04 (B:1-112)
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Clans
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Families
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Organisms
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Clan
:
Ig
(577)
Family
:
C2-set_2
(3)
Homo sapiens (Human)
(3)
1a
C2-set_2-2pf6B01
B:119-217
1b
C2-set_2-2pf6B02
B:119-217
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
2a
Ig_2-2pf6B03
B:1-112
2b
Ig_2-2pf6B04
B:1-112
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Show PDB file:
Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
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