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2PCE
Asym. Unit
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Asym.Unit (471 KB)
Biol.Unit 1 (465 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FROM ROSEOVARIUS NUBINHIBENS ISM
Authors
:
J. B. Bonanno, M. Rutter, K. T. Bain, C. Lau, S. Ozyurt, D. Smith, S. Wasse J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date
:
29 Mar 07 (Deposition) - 10 Apr 07 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Structural Genomics, Enolase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. B. Bonanno, M. Rutter, K. T. Bain, C. Lau, S. Ozyurt, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Mandelate Racemase/Muconate Lactonizing Enzyme From Roseovarius Nubinhibens Ism
To Be Published
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:92 , LYS A:96 , GLY A:97 , ARG A:99 , ARG A:102 , HOH A:565
BINDING SITE FOR RESIDUE PO4 A 401
2
AC2
SOFTWARE
ARG B:92 , GLY B:97 , ARG B:99 , ARG B:102
BINDING SITE FOR RESIDUE PO4 B 401
3
AC3
SOFTWARE
ARG C:92 , LYS C:96 , GLY C:97 , ARG C:99 , ARG C:102
BINDING SITE FOR RESIDUE PO4 C 401
4
AC4
SOFTWARE
ARG D:92 , LYS D:96 , GLY D:97 , ARG D:99 , ARG D:102
BINDING SITE FOR RESIDUE PO4 D 401
5
AC5
SOFTWARE
ARG E:92 , LYS E:96 , GLY E:97 , ARG E:99 , ARG E:102
BINDING SITE FOR RESIDUE PO4 E 401
6
AC6
SOFTWARE
ARG F:92 , GLY F:97 , ARG F:99 , ARG F:102
BINDING SITE FOR RESIDUE PO4 F 401
7
AC7
SOFTWARE
ARG G:92 , LYS G:96 , GLY G:97 , ARG G:99 , ARG G:102
BINDING SITE FOR RESIDUE PO4 G 401
8
AC8
SOFTWARE
GLY H:97 , ARG H:99 , ARG H:102
BINDING SITE FOR RESIDUE PO4 H 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2pcea1 (A:1-127)
1b: SCOP_d2pceb1 (B:1-127)
1c: SCOP_d2pcec1 (C:1-127)
1d: SCOP_d2pced1 (D:1-127)
1e: SCOP_d2pcee1 (E:1-127)
1f: SCOP_d2pcef1 (F:1-127)
1g: SCOP_d2pceg1 (G:1-127)
1h: SCOP_d2pceh1 (H:1-127)
2a: SCOP_d2pcea2 (A:128-372)
2b: SCOP_d2pceb2 (B:128-372)
2c: SCOP_d2pcec2 (C:128-372)
2d: SCOP_d2pced2 (D:128-372)
2e: SCOP_d2pcee2 (E:128-372)
2f: SCOP_d2pcef2 (F:128-372)
2g: SCOP_d2pceg2 (G:128-372)
2h: SCOP_d2pceh2 (H:128-372)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Roseovarius nubinhibens [TaxId: 89187]
(5)
1a
d2pcea1
A:1-127
1b
d2pceb1
B:1-127
1c
d2pcec1
C:1-127
1d
d2pced1
D:1-127
1e
d2pcee1
E:1-127
1f
d2pcef1
F:1-127
1g
d2pceg1
G:1-127
1h
d2pceh1
H:1-127
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Roseovarius nubinhibens [TaxId: 89187]
(5)
2a
d2pcea2
A:128-372
2b
d2pceb2
B:128-372
2c
d2pcec2
C:128-372
2d
d2pced2
D:128-372
2e
d2pcee2
E:128-372
2f
d2pcef2
F:128-372
2g
d2pceg2
G:128-372
2h
d2pceh2
H:128-372
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2pceA01 (A:1-118,A:362-372)
1b: CATH_2pceB01 (B:1-118,B:362-372)
1c: CATH_2pceC01 (C:1-118,C:362-372)
1d: CATH_2pceD01 (D:1-118,D:362-372)
1e: CATH_2pceE01 (E:1-118,E:362-372)
1f: CATH_2pceF01 (F:1-118,F:362-372)
1g: CATH_2pceG01 (G:1-118,G:362-372)
1h: CATH_2pceH01 (H:1-118,H:362-372)
2a: CATH_2pceA02 (A:119-361)
2b: CATH_2pceC02 (C:119-361)
2c: CATH_2pceD02 (D:119-361)
2d: CATH_2pceE02 (E:119-361)
2e: CATH_2pceG02 (G:119-361)
2f: CATH_2pceH02 (H:119-361)
2g: CATH_2pceB02 (B:119-361)
2h: CATH_2pceF02 (F:119-361)
View:
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)
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Roseovarius nubinhibens ism. Organism_taxid: 89187. Strain: ism.
(1)
1a
2pceA01
A:1-118,A:362-372
1b
2pceB01
B:1-118,B:362-372
1c
2pceC01
C:1-118,C:362-372
1d
2pceD01
D:1-118,D:362-372
1e
2pceE01
E:1-118,E:362-372
1f
2pceF01
F:1-118,F:362-372
1g
2pceG01
G:1-118,G:362-372
1h
2pceH01
H:1-118,H:362-372
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Roseovarius nubinhibens ism. Organism_taxid: 89187. Strain: ism.
(1)
2a
2pceA02
A:119-361
2b
2pceC02
C:119-361
2c
2pceD02
D:119-361
2d
2pceE02
E:119-361
2e
2pceG02
G:119-361
2f
2pceH02
H:119-361
2g
2pceB02
B:119-361
2h
2pceF02
F:119-361
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Pfam Domains
(0, 0)
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all PFAM domains
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