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2PBJ
Biol. Unit 1
Info
Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
GSH-HEME BOUND MICROSOMAL PROSTAGLANDIN E SYNTHASE
Authors
:
F. Takusagawa, T. Yamada
Date
:
28 Mar 07 (Deposition) - 12 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Prostaglandin E Synthase, Gsh-Heme Bound Enzyme, Dual Function Enzyme, Isomerase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yamada, F. Takusagawa
Pgh2 Degradation Pathway Catalyzed By Gsh-Heme Complex Bound Microsomal Prostaglandin E2 Synthase Type 2: The First Example Of A Dual-Function Enzyme.
Biochemistry V. 46 8414 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
2d: GLUTATHIONE (GSHd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GSH
2
Ligand/Ion
GLUTATHIONE
3
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:137 , ARG A:146 , TYR D:287
BINDING SITE FOR RESIDUE CL A 475
2
AC2
SOFTWARE
THR A:109 , PRO A:111 , PHE A:112 , PRO A:134 , VAL A:243 , HIS A:244 , SER A:247 , ILE A:264 , LEU A:293 , GSH A:477 , HOH A:497 , HOH A:514 , HOH B:502
BINDING SITE FOR RESIDUE HEM A 476
3
AC3
SOFTWARE
TYR A:107 , CYS A:110 , PHE A:112 , ARG A:146 , LYS A:147 , VAL A:148 , PRO A:149 , ASP A:164 , SER A:165 , HEM A:476 , HOH A:481 , HOH A:486
BINDING SITE FOR RESIDUE GSH A 477
4
AC4
SOFTWARE
ARG B:137 , ARG B:146 , TYR C:287
BINDING SITE FOR RESIDUE CL B 475
5
AC5
SOFTWARE
THR B:109 , PRO B:111 , PHE B:112 , PRO B:134 , VAL B:243 , HIS B:244 , SER B:247 , ILE B:264 , LEU B:293 , GSH B:477 , HOH B:499 , HOH B:510
BINDING SITE FOR RESIDUE HEM B 476
6
AC6
SOFTWARE
TYR B:107 , CYS B:110 , PHE B:112 , ARG B:146 , LYS B:147 , VAL B:148 , PRO B:149 , ASP B:164 , SER B:165 , HEM B:476 , HOH B:480 , HOH B:485
BINDING SITE FOR RESIDUE GSH B 477
7
AC7
SOFTWARE
TYR B:287 , ARG C:137 , ARG C:146
BINDING SITE FOR RESIDUE CL C 475
8
BC1
SOFTWARE
TYR A:287 , ARG D:137 , ARG D:146
BINDING SITE FOR RESIDUE CL D 475
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_1 (A:104-120,B:104-120)
2: GST_CTER (A:263-373,B:263-373)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_1
PS00195
Glutaredoxin active site.
PGES2_MACFA
104-120
2
A:104-120
B:104-120
-
-
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
PGES2_MACFA
263-377
2
A:263-373
B:263-373
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pbja1 (A:213-373)
1b: SCOP_d2pbjb1 (B:213-373)
1c: SCOP_d2pbjc1 (C:213-373)
1d: SCOP_d2pbjd1 (D:213-373)
2a: SCOP_d2pbja2 (A:100-212)
2b: SCOP_d2pbjb2 (B:100-212)
2c: SCOP_d2pbjc2 (C:100-212)
2d: SCOP_d2pbjd2 (D:100-212)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
1a
d2pbja1
A:213-373
1b
d2pbjb1
B:213-373
1c
d2pbjc1
C:213-373
1d
d2pbjd1
D:213-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
2a
d2pbja2
A:100-212
2b
d2pbjb2
B:100-212
2c
d2pbjc2
C:100-212
2d
d2pbjd2
D:100-212
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_2pbjD01 (D:277-369)
1b: PFAM_GST_C_2pbjD02 (D:277-369)
1c: PFAM_GST_C_2pbjD03 (D:277-369)
1d: PFAM_GST_C_2pbjD04 (D:277-369)
2a: PFAM_Glutaredoxin_2pbjD05 (D:102-158)
2b: PFAM_Glutaredoxin_2pbjD06 (D:102-158)
2c: PFAM_Glutaredoxin_2pbjD07 (D:102-158)
2d: PFAM_Glutaredoxin_2pbjD08 (D:102-158)
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(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
1a
GST_C-2pbjD01
D:277-369
1b
GST_C-2pbjD02
D:277-369
1c
GST_C-2pbjD03
D:277-369
1d
GST_C-2pbjD04
D:277-369
Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
2a
Glutaredoxin-2pbjD05
D:102-158
2b
Glutaredoxin-2pbjD06
D:102-158
2c
Glutaredoxin-2pbjD07
D:102-158
2d
Glutaredoxin-2pbjD08
D:102-158
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Asym.Unit (193 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (95 KB)
Header - Biol.Unit 2
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