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2PBJ
Asym. Unit
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Asym.Unit (193 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (95 KB)
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(1)
Title
:
GSH-HEME BOUND MICROSOMAL PROSTAGLANDIN E SYNTHASE
Authors
:
F. Takusagawa, T. Yamada
Date
:
28 Mar 07 (Deposition) - 12 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Prostaglandin E Synthase, Gsh-Heme Bound Enzyme, Dual Function Enzyme, Isomerase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Yamada, F. Takusagawa
Pgh2 Degradation Pathway Catalyzed By Gsh-Heme Complex Bound Microsomal Prostaglandin E2 Synthase Type 2: The First Example Of A Dual-Function Enzyme.
Biochemistry V. 46 8414 2007
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
2d: GLUTATHIONE (GSHd)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GSH
4
Ligand/Ion
GLUTATHIONE
3
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:137 , ARG A:146 , TYR D:287
BINDING SITE FOR RESIDUE CL A 475
02
AC2
SOFTWARE
THR A:109 , PRO A:111 , PHE A:112 , PRO A:134 , VAL A:243 , HIS A:244 , SER A:247 , ILE A:264 , LEU A:293 , GSH A:477 , HOH A:497 , HOH A:514 , HOH B:502
BINDING SITE FOR RESIDUE HEM A 476
03
AC3
SOFTWARE
TYR A:107 , CYS A:110 , PHE A:112 , ARG A:146 , LYS A:147 , VAL A:148 , PRO A:149 , ASP A:164 , SER A:165 , HEM A:476 , HOH A:481 , HOH A:486
BINDING SITE FOR RESIDUE GSH A 477
04
AC4
SOFTWARE
ARG B:137 , ARG B:146 , TYR C:287
BINDING SITE FOR RESIDUE CL B 475
05
AC5
SOFTWARE
THR B:109 , PRO B:111 , PHE B:112 , PRO B:134 , VAL B:243 , HIS B:244 , SER B:247 , ILE B:264 , LEU B:293 , GSH B:477 , HOH B:499 , HOH B:510
BINDING SITE FOR RESIDUE HEM B 476
06
AC6
SOFTWARE
TYR B:107 , CYS B:110 , PHE B:112 , ARG B:146 , LYS B:147 , VAL B:148 , PRO B:149 , ASP B:164 , SER B:165 , HEM B:476 , HOH B:480 , HOH B:485
BINDING SITE FOR RESIDUE GSH B 477
07
AC7
SOFTWARE
TYR B:287 , ARG C:137 , ARG C:146
BINDING SITE FOR RESIDUE CL C 475
08
AC8
SOFTWARE
THR C:109 , CYS C:110 , PRO C:111 , PHE C:112 , PRO C:134 , VAL C:243 , HIS C:244 , SER C:247 , ILE C:264 , LEU C:293 , GSH C:477 , HOH C:514
BINDING SITE FOR RESIDUE HEM C 476
09
AC9
SOFTWARE
TYR C:107 , CYS C:110 , PHE C:112 , ARG C:146 , LYS C:147 , VAL C:148 , ASP C:164 , SER C:165 , HEM C:476 , HOH C:484 , HOH C:502
BINDING SITE FOR RESIDUE GSH C 477
10
BC1
SOFTWARE
TYR A:287 , ARG D:137 , ARG D:146
BINDING SITE FOR RESIDUE CL D 475
11
BC2
SOFTWARE
THR D:109 , CYS D:110 , PRO D:111 , PHE D:112 , PRO D:134 , VAL D:243 , HIS D:244 , SER D:247 , ILE D:264 , LEU D:293 , GSH D:477 , HOH D:492
BINDING SITE FOR RESIDUE HEM D 476
12
BC3
SOFTWARE
TYR D:107 , CYS D:110 , PHE D:112 , ARG D:146 , LYS D:147 , VAL D:148 , ASP D:164 , SER D:165 , HEM D:476
BINDING SITE FOR RESIDUE GSH D 477
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: GLUTAREDOXIN_1 (A:104-120,B:104-120,C:104-120,D:10...)
2: GST_CTER (A:263-373,B:263-373,C:263-373,D:26...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUTAREDOXIN_1
PS00195
Glutaredoxin active site.
PGES2_MACFA
104-120
4
A:104-120
B:104-120
C:104-120
D:104-120
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
PGES2_MACFA
263-377
4
A:263-373
B:263-373
C:263-373
D:263-373
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pbja1 (A:213-373)
1b: SCOP_d2pbjb1 (B:213-373)
1c: SCOP_d2pbjc1 (C:213-373)
1d: SCOP_d2pbjd1 (D:213-373)
2a: SCOP_d2pbja2 (A:100-212)
2b: SCOP_d2pbjb2 (B:100-212)
2c: SCOP_d2pbjc2 (C:100-212)
2d: SCOP_d2pbjd2 (D:100-212)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
1a
d2pbja1
A:213-373
1b
d2pbjb1
B:213-373
1c
d2pbjc1
C:213-373
1d
d2pbjd1
D:213-373
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Microsomal prostaglandin E synthase-2
(2)
Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]
(2)
2a
d2pbja2
A:100-212
2b
d2pbjb2
B:100-212
2c
d2pbjc2
C:100-212
2d
d2pbjd2
D:100-212
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_2pbjD01 (D:277-369)
1b: PFAM_GST_C_2pbjD02 (D:277-369)
1c: PFAM_GST_C_2pbjD03 (D:277-369)
1d: PFAM_GST_C_2pbjD04 (D:277-369)
2a: PFAM_Glutaredoxin_2pbjD05 (D:102-158)
2b: PFAM_Glutaredoxin_2pbjD06 (D:102-158)
2c: PFAM_Glutaredoxin_2pbjD07 (D:102-158)
2d: PFAM_Glutaredoxin_2pbjD08 (D:102-158)
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(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
1a
GST_C-2pbjD01
D:277-369
1b
GST_C-2pbjD02
D:277-369
1c
GST_C-2pbjD03
D:277-369
1d
GST_C-2pbjD04
D:277-369
Clan
:
Thioredoxin
(367)
Family
:
Glutaredoxin
(22)
Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
(2)
2a
Glutaredoxin-2pbjD05
D:102-158
2b
Glutaredoxin-2pbjD06
D:102-158
2c
Glutaredoxin-2pbjD07
D:102-158
2d
Glutaredoxin-2pbjD08
D:102-158
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Asym.Unit (193 KB)
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