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2P9U
Biol. Unit 1
Info
Asym.Unit (286 KB)
Biol.Unit 1 (278 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOVINE ARP2/3 COMPLEX CO-CRYSTALLIZED WITH AMP-PNP AND CALCIUM
Authors
:
B. J. Nolen, T. D. Pollard
Date
:
26 Mar 07 (Deposition) - 29 May 07 (Release) - 24 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Actin, Wd Repeat, Complex, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. J. Nolen, T. D. Pollard
Insights Into The Influence Of Nucleotides On Actin Family Proteins From Seven Structures Of Arp2/3 Complex.
Mol. Cell V. 26 449 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
CA
-1
Ligand/Ion
CALCIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:144 , ANP A:901 , HOH A:906
BINDING SITE FOR RESIDUE CA A 801
2
AC2
SOFTWARE
ANP B:902
BINDING SITE FOR RESIDUE CA B 802
3
AC3
SOFTWARE
THR A:14 , GLY A:15 , TYR A:16 , LYS A:18 , GLY A:171 , ASP A:172 , GLY A:197 , LYS A:228 , GLU A:229 , GLY A:324 , PHE A:328 , CA A:801 , HOH A:913
BINDING SITE FOR RESIDUE ANP A 901
4
AC4
SOFTWARE
GLY B:160 , ASP B:161 , GLY B:186 , ARG B:214 , LYS B:217 , GLU B:218 , GLY B:306 , SER B:307 , MET B:309 , TYR B:310 , CA B:802 , HOH B:906 , HOH B:909
BINDING SITE FOR RESIDUE ANP B 902
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ACTINS_ACT_LIKE (A:111-123)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ARP3_BOVIN
111-123
1
A:111-123
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(7, 9)
Info
All SCOP Domains
1a: SCOP_d2p9ug_ (G:)
2a: SCOP_d2p9ue_ (E:)
3a: SCOP_d2p9uc_ (C:)
4a: SCOP_d2p9ud1 (D:1-120)
4b: SCOP_d2p9ud2 (D:121-282)
5a: SCOP_d2p9uf_ (F:)
6a: SCOP_d2p9ub1 (B:147-357)
7a: SCOP_d2p9ua1 (A:3-160)
7b: SCOP_d2p9ua2 (A:161-416)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Arp2/3 complex 16 kDa subunit ARPC5
(17)
Family
:
Arp2/3 complex 16 kDa subunit ARPC5
(17)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(14)
1a
d2p9ug_
G:
Fold
:
Arp2/3 complex 21 kDa subunit ARPC3
(17)
Superfamily
:
Arp2/3 complex 21 kDa subunit ARPC3
(17)
Family
:
Arp2/3 complex 21 kDa subunit ARPC3
(17)
Protein domain
:
automated matches
(12)
Cow (Bos taurus) [TaxId: 9913]
(12)
2a
d2p9ue_
E:
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
automated matches
(14)
Cow (Bos taurus) [TaxId: 9913]
(14)
3a
d2p9uc_
C:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Secretion chaperone-like
(60)
Superfamily
:
Arp2/3 complex subunits
(34)
Family
:
Arp2/3 complex subunits
(34)
Protein domain
:
ARPC2 (34 kDa subunit)
(16)
Cow (Bos taurus) [TaxId: 9913]
(16)
4a
d2p9ud1
D:1-120
4b
d2p9ud2
D:121-282
Protein domain
:
ARPC4 (20 kDa subunit)
(17)
Cow (Bos taurus) [TaxId: 9913]
(17)
5a
d2p9uf_
F:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin-related protein 2, Arp2
(14)
Cow (Bos taurus) [TaxId: 9913]
(14)
6a
d2p9ub1
B:147-357
Protein domain
:
Actin-related protein 3, Arp3
(16)
Cow (Bos taurus) [TaxId: 9913]
(16)
7a
d2p9ua1
A:3-160
7b
d2p9ua2
A:161-416
[
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]
CATH Domains
(7, 10)
Info
all CATH domains
1a: CATH_2p9uA01 (A:4-34,A:78-141,A:375-411)
1b: CATH_2p9uA03 (A:143-196,A:292-370)
2a: CATH_2p9uD02 (D:133-282)
2b: CATH_2p9uD01 (D:1-131)
2c: CATH_2p9uF00 (F:2-168)
3a: CATH_2p9uA04 (A:197-288)
4a: CATH_2p9uG00 (G:9-151)
5a: CATH_2p9uE00 (E:2-175)
6a: CATH_2p9uC00 (C:2-372)
7a: CATH_2p9uA02 (A:35-75)
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)
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)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Cattle (Bos taurus)
(47)
1a
2p9uA01
A:4-34,A:78-141,A:375-411
1b
2p9uA03
A:143-196,A:292-370
Topology
:
Yope Regulator; Chain: A,
(26)
Homologous Superfamily
:
[code=3.30.1460.20, no name defined]
(13)
Cattle (Bos taurus)
(10)
2a
2p9uD02
D:133-282
2b
2p9uD01
D:1-131
2c
2p9uF00
F:2-168
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Cattle (Bos taurus)
(47)
3a
2p9uA04
A:197-288
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.190, no name defined]
(12)
Cattle (Bos taurus)
(10)
4a
2p9uG00
G:9-151
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arp2/3 complex 21 kDa subunit ARPC3
(12)
Homologous Superfamily
:
Arp2/3 complex 21 kDa subunit ARPC3
(12)
Cattle (Bos taurus)
(10)
5a
2p9uE00
E:2-175
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Cattle (Bos taurus)
(18)
6a
2p9uC00
C:2-372
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Cattle (Bos taurus)
(6)
7a
2p9uA02
A:35-75
[
close CATH info
]
Pfam Domains
(6, 8)
Info
all PFAM domains
1a: PFAM_Actin_2p9uB01 (B:110-357)
1b: PFAM_Actin_2p9uA01 (A:3-412)
2a: PFAM_WD40_2p9uC01 (C:132-170)
2b: PFAM_WD40_2p9uC02 (C:132-170)
3a: PFAM_ARPC4_2p9uF01 (F:2-168)
4a: PFAM_P16_Arc_2p9uG01 (G:9-151)
5a: PFAM_P21_Arc_2p9uE01 (E:2-173)
6a: PFAM_P34_Arc_2p9uD01 (D:56-282)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Bos taurus (Bovine)
(11)
1a
Actin-2p9uB01
B:110-357
1b
Actin-2p9uA01
A:3-412
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Bos taurus (Bovine)
(19)
2a
WD40-2p9uC01
C:132-170
2b
WD40-2p9uC02
C:132-170
Clan
:
no clan defined [family: ARPC4]
(10)
Family
:
ARPC4
(10)
Bos taurus (Bovine)
(10)
3a
ARPC4-2p9uF01
F:2-168
Clan
:
no clan defined [family: P16-Arc]
(10)
Family
:
P16-Arc
(10)
Bos taurus (Bovine)
(10)
4a
P16-Arc-2p9uG01
G:9-151
Clan
:
no clan defined [family: P21-Arc]
(10)
Family
:
P21-Arc
(10)
Bos taurus (Bovine)
(10)
5a
P21-Arc-2p9uE01
E:2-173
Clan
:
no clan defined [family: P34-Arc]
(10)
Family
:
P34-Arc
(10)
Bos taurus (Bovine)
(10)
6a
P34-Arc-2p9uD01
D:56-282
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Asym.Unit (286 KB)
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