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2P6V
Biol. Unit 1
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Asym.Unit (24 KB)
Biol.Unit 1 (101 KB)
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(1)
Title
:
STRUCTURE OF TAFH DOMAIN OF THE HUMAN TAF4 SUBUNIT OF TFIID
Authors
:
X. Wang, D. M. Truckses, S. Takada, T. Matsumura, N. Tanese, R. H. Jacobson
Date
:
19 Mar 07 (Deposition) - 15 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Alpha Helix, Transcription
(Keyword Search:
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Reference
:
X. Wang, D. M. Truckses, S. Takada, T. Matsumura, N. Tanese, R. H. Jacobson
Conserved Region I Of Human Coactivator Taf4 Binds To A Short Hydrophobic Motif Present In Transcriptional Regulators.
Proc. Natl. Acad. Sci. Usa V. 104 7839 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 54)
Info
All Hetero Components
1a: N-DIMETHYL-LYSINE (MLYa)
1b: N-DIMETHYL-LYSINE (MLYb)
1c: N-DIMETHYL-LYSINE (MLYc)
1d: N-DIMETHYL-LYSINE (MLYd)
1e: N-DIMETHYL-LYSINE (MLYe)
1f: N-DIMETHYL-LYSINE (MLYf)
1g: N-DIMETHYL-LYSINE (MLYg)
1h: N-DIMETHYL-LYSINE (MLYh)
2a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
MLY
48
Mod. Amino Acid
N-DIMETHYL-LYSINE
2
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:646 , SER A:647
BINDING SITE FOR RESIDUE SO4 A 700
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_052258 (P650L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052258
P
651
L
TAF4_HUMAN
Polymorphism
6089604
A
P
650
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: TAFH (A:589-678)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TAFH
PS51119
TAFH/NHR1 domain profile.
TAF4_HUMAN
590-687
6
A:589-678
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2p6va1 (A:582-678)
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Class
:
All alpha proteins
(14657)
Fold
:
TAFH domain-like
(4)
Superfamily
:
TAFH domain-like
(4)
Family
:
TAFH domain-like
(4)
Protein domain
:
Transcription initiation factor TFIID subunit 4, TAF4
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2p6va1
A:582-678
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_TAFH_2p6vA01 (A:589-678)
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Clan
:
no clan defined [family: TAFH]
(3)
Family
:
TAFH
(3)
Homo sapiens (Human)
(3)
1a
TAFH-2p6vA01
A:589-678
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