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2P5S
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
RAB DOMAIN OF HUMAN RASEF IN COMPLEX WITH GDP
Authors
:
H. Zhu, J. Wang, Y. Shen, W. Tempel, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
16 Mar 07 (Deposition) - 27 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
G-Protein, Rab, Gdp, Structural Genomics, Sgc, Structural Genomics Consortium, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Zhu, J. Wang, Y. Shen, W. Tempel, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Rab Domain Of Human Rasef In Complex With Gdp
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
UNX
3
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(6, 12)
Info
All Exons
Exon 1.13 (A:541-567 | B:541-575 (gaps))
Exon 1.14 (A:578-602 | B:575-602)
Exon 1.15 (A:602-640 | B:602-640)
Exon 1.16 (A:641-680 (gaps) | B:641-680 (gaps...)
Exon 1.17 (A:681-706 | B:681-706)
Exon 1.18 (A:706-710 | B:706-711)
View:
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All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16
5: Boundary 1.16/1.17
6: Boundary 1.17/1.18
7: Boundary 1.18/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000376447
1b
ENSE00001391250
chr9:
85678043-85677352
692
RASEF_HUMAN
1-144
144
0
-
-
1.3
ENST00000376447
3
ENSE00001307793
chr9:
85640836-85640690
147
RASEF_HUMAN
144-193
50
0
-
-
1.4
ENST00000376447
4
ENSE00001090428
chr9:
85637341-85637251
91
RASEF_HUMAN
193-223
31
0
-
-
1.5
ENST00000376447
5
ENSE00001090425
chr9:
85630815-85630720
96
RASEF_HUMAN
224-255
32
0
-
-
1.6
ENST00000376447
6
ENSE00001090422
chr9:
85627426-85627349
78
RASEF_HUMAN
256-281
26
0
-
-
1.7
ENST00000376447
7
ENSE00001090432
chr9:
85624671-85624556
116
RASEF_HUMAN
282-320
39
0
-
-
1.8
ENST00000376447
8
ENSE00001293362
chr9:
85622420-85622352
69
RASEF_HUMAN
320-343
24
0
-
-
1.9
ENST00000376447
9
ENSE00001308048
chr9:
85620415-85620331
85
RASEF_HUMAN
343-371
29
0
-
-
1.10
ENST00000376447
10
ENSE00001328763
chr9:
85619501-85619413
89
RASEF_HUMAN
372-401
30
0
-
-
1.11
ENST00000376447
11
ENSE00001294194
chr9:
85616045-85615811
235
RASEF_HUMAN
401-479
79
0
-
-
1.12
ENST00000376447
12
ENSE00001313770
chr9:
85615485-85615348
138
RASEF_HUMAN
480-525
46
0
-
-
1.13
ENST00000376447
13
ENSE00001298797
chr9:
85615231-85615084
148
RASEF_HUMAN
526-575
50
2
A:541-567
B:541-575 (gaps)
27
35
1.14
ENST00000376447
14
ENSE00001383554
chr9:
85613361-85613280
82
RASEF_HUMAN
575-602
28
2
A:578-602
B:575-602
25
28
1.15
ENST00000376447
15
ENSE00001321082
chr9:
85612041-85611927
115
RASEF_HUMAN
602-640
39
2
A:602-640
B:602-640
39
39
1.16
ENST00000376447
16
ENSE00001299807
chr9:
85607940-85607821
120
RASEF_HUMAN
641-680
40
2
A:641-680 (gaps)
B:641-680 (gaps)
40
40
1.17
ENST00000376447
17
ENSE00001317027
chr9:
85605382-85605306
77
RASEF_HUMAN
681-706
26
2
A:681-706
B:681-706
26
26
1.18
ENST00000376447
18
ENSE00001295835
chr9:
85597697-85594500
3198
RASEF_HUMAN
706-740
35
2
A:706-710
B:706-711
5
6
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2p5sa_ (A:)
1b: SCOP_d2p5sb_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d2p5sa_
A:
1b
d2p5sb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ras_2p5sB01 (B:543-710)
1b: PFAM_Ras_2p5sB02 (B:543-710)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2p5sB01
B:543-710
1b
Ras-2p5sB02
B:543-710
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Asymmetric Unit 1
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Asym.Unit (57 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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