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2P4E
Biol. Unit 3
Info
Asym.Unit (107 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCSK9
Authors
:
D. Cunningham, D. E. Danley, F. K. Geoghegan, M. C. Griffor, J. L. Hawkin
Date
:
12 Mar 07 (Deposition) - 10 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,P
Biol. Unit 1: P (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: A,P (1x)
Keywords
:
Protease, Subtilisin, Ldl Receptor, Ldl, Endocytosis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Cunningham, D. E. Danley, K. F. Geoghegan, M. C. Griffor, J. L. Hawkins, T. A. Subashi, A. H. Varghese, M. J. Ammirati, J. S. Culp, L. R. Hoth, M. N. Mansour, K. M. Mcgrath, A. P. Seddon, S. Shenolikar, K. J. Stutzman-Engwall, L. C. Warren, D. Xia, X. Qiu
Structural And Biophysical Studies Of Pcsk9 And Its Mutants Linked To Familial Hypercholesterolemia.
Nat. Struct. Mol. Biol. V. 14 413 2007
[
close entry info
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:293 , HOH A:768 , HOH A:876 , CYS P:67 , SER P:147 , HG P:694
BINDING SITE FOR RESIDUE HG P 693
2
AC2
SOFTWARE
GLY A:292 , HOH A:876 , CYS P:67 , SER P:147 , HG P:693 , HOH P:723
BINDING SITE FOR RESIDUE HG P 694
[
close Site info
]
SAPs(SNPs)/Variants
(32, 32)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_058520 (T77I, chain P, )
02: VAR_058521 (R93C, chain P, )
03: VAR_058522 (G106R, chain P, )
04: VAR_058523 (V114A, chain P, )
05: VAR_017199 (S127R, chain P, )
06: VAR_058524 (D129G, chain P, )
07: VAR_058525 (N157K, chain A, )
08: VAR_058528 (Q219E, chain A, )
09: VAR_025452 (R237W, chain A, )
10: VAR_058529 (A239D, chain A, )
11: VAR_025453 (L253F, chain A, )
12: VAR_058530 (R357H, chain A, )
13: VAR_058531 (D374H, chain A, )
14: VAR_058532 (D374Y, chain A, )
15: VAR_025454 (H391N, chain A, )
16: VAR_067282 (G394S, chain A, )
17: VAR_025455 (H417Q, chain A, )
18: VAR_021337 (N425S, chain A, )
19: VAR_021338 (A443T, chain A, )
20: VAR_025456 (R469W, chain A, )
21: VAR_021339 (I474I, chain A, )
22: VAR_025457 (E482G, chain A, )
23: VAR_073657 (E482Q, chain A, )
24: VAR_058534 (R496W, chain A, )
25: VAR_025458 (F515L, chain A, )
26: VAR_058535 (A522T, chain A, )
27: VAR_021340 (H553R, chain A, )
28: VAR_025459 (Q554E, chain A, )
29: VAR_058536 (P616L, chain A, )
30: VAR_021341 (Q619P, chain A, )
31: VAR_058537 (S668R, chain A, )
32: VAR_017201 (E670E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_058520
T
77
I
PCSK9_HUMAN
Polymorphism
---
P
T
77
I
02
UniProt
VAR_058521
R
93
C
PCSK9_HUMAN
Polymorphism
151193009
P
R
93
C
03
UniProt
VAR_058522
G
106
R
PCSK9_HUMAN
Polymorphism
---
P
G
106
R
04
UniProt
VAR_058523
V
114
A
PCSK9_HUMAN
Polymorphism
---
P
V
114
A
05
UniProt
VAR_017199
S
127
R
PCSK9_HUMAN
Disease (HCHOLA3)
28942111
P
S
127
R
06
UniProt
VAR_058524
D
129
G
PCSK9_HUMAN
Disease (HCHOLA3)
---
P
D
129
G
07
UniProt
VAR_058525
N
157
K
PCSK9_HUMAN
Polymorphism
---
A
N
157
K
08
UniProt
VAR_058528
Q
219
E
PCSK9_HUMAN
Polymorphism
---
A
Q
219
E
09
UniProt
VAR_025452
R
237
W
PCSK9_HUMAN
Polymorphism
---
A
R
237
W
10
UniProt
VAR_058529
A
239
D
PCSK9_HUMAN
Polymorphism
---
A
A
239
D
11
UniProt
VAR_025453
L
253
F
PCSK9_HUMAN
Polymorphism
28362270
A
L
253
F
12
UniProt
VAR_058530
R
357
H
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
R
357
H
13
UniProt
VAR_058531
D
374
H
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
D
374
H
14
UniProt
VAR_058532
D
374
Y
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
D
374
Y
15
UniProt
VAR_025454
H
391
N
PCSK9_HUMAN
Polymorphism
---
A
H
391
N
16
UniProt
VAR_067282
G
394
S
PCSK9_HUMAN
Unclassified
---
A
G
394
S
17
UniProt
VAR_025455
H
417
Q
PCSK9_HUMAN
Polymorphism
143275858
A
H
417
Q
18
UniProt
VAR_021337
N
425
S
PCSK9_HUMAN
Polymorphism
28362261
A
N
425
S
19
UniProt
VAR_021338
A
443
T
PCSK9_HUMAN
Polymorphism
28362263
A
A
443
T
20
UniProt
VAR_025456
R
469
W
PCSK9_HUMAN
Polymorphism
141502002
A
R
469
W
21
UniProt
VAR_021339
V
474
I
PCSK9_HUMAN
Polymorphism
562556
A
I
474
I
22
UniProt
VAR_025457
E
482
G
PCSK9_HUMAN
Polymorphism
---
A
E
482
G
23
UniProt
VAR_073657
E
482
Q
PCSK9_HUMAN
Unclassified
---
A
E
482
Q
24
UniProt
VAR_058534
R
496
W
PCSK9_HUMAN
Disease (HCHOLA3)
---
A
R
496
W
25
UniProt
VAR_025458
F
515
L
PCSK9_HUMAN
Polymorphism
---
A
F
515
L
26
UniProt
VAR_058535
A
522
T
PCSK9_HUMAN
Polymorphism
---
A
A
522
T
27
UniProt
VAR_021340
H
553
R
PCSK9_HUMAN
Polymorphism
28362270
A
H
553
R
28
UniProt
VAR_025459
Q
554
E
PCSK9_HUMAN
Polymorphism
149311926
A
Q
554
E
29
UniProt
VAR_058536
P
616
L
PCSK9_HUMAN
Polymorphism
---
A
P
616
L
30
UniProt
VAR_021341
Q
619
P
PCSK9_HUMAN
Polymorphism
28362277
A
Q
619
P
31
UniProt
VAR_058537
S
668
R
PCSK9_HUMAN
Polymorphism
---
A
S
668
R
32
UniProt
VAR_017201
G
670
E
PCSK9_HUMAN
Polymorphism
505151
A
E
670
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Inhibitor_I9_2p4eP01 (P:77-152)
2a: PFAM_Peptidase_S8_2p4eA01 (A:181-443)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Inhibitor_I9]
(12)
Family
:
Inhibitor_I9
(12)
Homo sapiens (Human)
(10)
1a
Inhibitor_I9-2p4eP01
P:77-152
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Homo sapiens (Human)
(10)
2a
Peptidase_S8-2p4eA01
A:181-443
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