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2P4E
Biol. Unit 1
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Asym.Unit (107 KB)
Biol.Unit 1 (20 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PCSK9
Authors
:
D. Cunningham, D. E. Danley, F. K. Geoghegan, M. C. Griffor, J. L. Hawkin
Date
:
12 Mar 07 (Deposition) - 10 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,P
Biol. Unit 1: P (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: A,P (1x)
Keywords
:
Protease, Subtilisin, Ldl Receptor, Ldl, Endocytosis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Cunningham, D. E. Danley, K. F. Geoghegan, M. C. Griffor, J. L. Hawkins, T. A. Subashi, A. H. Varghese, M. J. Ammirati, J. S. Culp, L. R. Hoth, M. N. Mansour, K. M. Mcgrath, A. P. Seddon, S. Shenolikar, K. J. Stutzman-Engwall, L. C. Warren, D. Xia, X. Qiu
Structural And Biophysical Studies Of Pcsk9 And Its Mutants Linked To Familial Hypercholesterolemia.
Nat. Struct. Mol. Biol. V. 14 413 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:293 , HOH A:768 , HOH A:876 , CYS P:67 , SER P:147 , HG P:694
BINDING SITE FOR RESIDUE HG P 693
2
AC2
SOFTWARE
GLY A:292 , HOH A:876 , CYS P:67 , SER P:147 , HG P:693 , HOH P:723
BINDING SITE FOR RESIDUE HG P 694
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_058520 (T77I, chain P, )
2: VAR_058521 (R93C, chain P, )
3: VAR_058522 (G106R, chain P, )
4: VAR_058523 (V114A, chain P, )
5: VAR_017199 (S127R, chain P, )
6: VAR_058524 (D129G, chain P, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_058520
T
77
I
PCSK9_HUMAN
Polymorphism
---
P
T
77
I
02
UniProt
VAR_058521
R
93
C
PCSK9_HUMAN
Polymorphism
151193009
P
R
93
C
03
UniProt
VAR_058522
G
106
R
PCSK9_HUMAN
Polymorphism
---
P
G
106
R
04
UniProt
VAR_058523
V
114
A
PCSK9_HUMAN
Polymorphism
---
P
V
114
A
05
UniProt
VAR_017199
S
127
R
PCSK9_HUMAN
Disease (HCHOLA3)
28942111
P
S
127
R
06
UniProt
VAR_058524
D
129
G
PCSK9_HUMAN
Disease (HCHOLA3)
---
P
D
129
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Inhibitor_I9_2p4eP01 (P:77-152)
2a: PFAM_Peptidase_S8_2p4eA01 (A:181-443)
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Clans
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Families
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Organisms
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)
(
)
Clan
:
no clan defined [family: Inhibitor_I9]
(12)
Family
:
Inhibitor_I9
(12)
Homo sapiens (Human)
(10)
1a
Inhibitor_I9-2p4eP01
P:77-152
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Homo sapiens (Human)
(10)
2a
Peptidase_S8-2p4eA01
A:181-443
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Chain P
Asymmetric Unit 1
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Asym.Unit (107 KB)
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