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2P3Y
Asym. Unit
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Asym.Unit (171 KB)
Biol.Unit 1 (164 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VPA0735 FROM VIBRIO PARAHAEMOLYTICUS. NORTHEAST STRUCTURAL GENOMICS TARGET VPR109
Authors
:
J. Seetharaman, H. Neely, F. Forouhar, D. Wang, Y. Fang, K. Cunningham, R. Xia, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Ton J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date
:
10 Mar 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hypothetical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Seetharaman, H. Neely, F. Forouhar, D. Wang, Y. Fang, K. Cunningham L-C. Ma, R. Xia, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of Vpa0735 From Vibrio Parahaemolyticus.
To Be Published
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Hetero Components
(1, 28)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
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No.
Name
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1
MSE
28
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2p3ya1 (A:22-482)
1b: SCOP_d2p3yb_ (B:)
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
VPA0735-like
(2)
Superfamily
:
VPA0735-like
(2)
Family
:
VPA0735-like
(2)
Protein domain
:
Hypothetical protein VPA0735
(2)
Vibrio parahaemolyticus [TaxId: 670]
(2)
1a
d2p3ya1
A:22-482
1b
d2p3yb_
B:
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_2p3yA02 (A:53-82,A:231-307)
1b: CATH_2p3yB02 (B:53-82,B:231-307)
2a: CATH_2p3yA03 (A:83-230)
2b: CATH_2p3yB03 (B:83-230)
3a: CATH_2p3yA04 (A:308-482)
3b: CATH_2p3yB04 (B:308-482)
4a: CATH_2p3yA01 (A:22-51)
4b: CATH_2p3yB01 (B:22-51)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
VPA0735-like fold
(1)
Homologous Superfamily
:
VPA0735-like domain
(1)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
1a
2p3yA02
A:53-82,A:231-307
1b
2p3yB02
B:53-82,B:231-307
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
VPA0735-like domain
(1)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
2a
2p3yA03
A:83-230
2b
2p3yB03
B:83-230
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
VPA0735-like domain
(1)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
3a
2p3yA04
A:308-482
3b
2p3yB04
B:308-482
Architecture
:
Single Sheet
(341)
Topology
:
N-terminal domain of TfIIb
(166)
Homologous Superfamily
:
[code=2.20.25.10, no name defined]
(79)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
4a
2p3yA01
A:22-51
4b
2p3yB01
B:22-51
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_DUF1214_2p3yB01 (B:358-468)
1b: PFAM_DUF1214_2p3yB02 (B:358-468)
2a: PFAM_DUF1254_2p3yB03 (B:86-212)
2b: PFAM_DUF1254_2p3yB04 (B:86-212)
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Clan
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DUF1214
(1)
Family
:
DUF1214
(1)
Vibrio parahaemolyticus
(1)
1a
DUF1214-2p3yB01
B:358-468
1b
DUF1214-2p3yB02
B:358-468
Family
:
DUF1254
(1)
Vibrio parahaemolyticus
(1)
2a
DUF1254-2p3yB03
B:86-212
2b
DUF1254-2p3yB04
B:86-212
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