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2P3W
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HTRA3 PDZ DOMAIN BOUND TO A PHAGE-DERIVED LIGAND (FGRWV)
Authors
:
B. A. Appleton, C. Wiesmann
Date
:
09 Mar 07 (Deposition) - 06 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Pdz Domain, Phage Derived High Affinity Ligand, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. T. Runyon, Y. Zhang, B. A. Appleton, S. L. Sazinsky, P. Wu, B. Pan, C. Wiesmann, N. J. Skelton, S. S. Sidhu
Structural And Functional Analysis Of The Pdz Domains Of Human Htra1 And Htra3.
Protein Sci. V. 16 2454 2007
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:385-426,B:385-426)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
HTRA3_HUMAN
385-426
2
A:385-426
B:385-426
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Exons
(4, 8)
Info
All Exons
Exon 1.6 (A:350-351 | B:350-351)
Exon 1.8 (A:351-367 | B:351-367)
Exon 1.9 (A:367-399 (gaps) | B:367-399 (gaps...)
Exon 1.10 (A:399-453 | B:399-453)
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1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000307358
1a
ENSE00001134419
chr4:
8271492-8272080
589
HTRA3_HUMAN
1-129
129
0
-
-
1.2
ENST00000307358
2
ENSE00001136279
chr4:
8284164-8284263
100
HTRA3_HUMAN
129-162
34
0
-
-
1.3
ENST00000307358
3
ENSE00001136273
chr4:
8288288-8288510
223
HTRA3_HUMAN
162-236
75
0
-
-
1.4
ENST00000307358
4
ENSE00001136267
chr4:
8293097-8293291
195
HTRA3_HUMAN
237-301
65
0
-
-
1.5
ENST00000307358
5
ENSE00001136260
chr4:
8294048-8294080
33
HTRA3_HUMAN
302-312
11
0
-
-
1.6
ENST00000307358
6
ENSE00001134412
chr4:
8295814-8295928
115
HTRA3_HUMAN
313-351
39
2
A:350-351
B:350-351
2
2
1.8
ENST00000307358
8
ENSE00001136255
chr4:
8304190-8304238
49
HTRA3_HUMAN
351-367
17
2
A:351-367
B:351-367
17
17
1.9
ENST00000307358
9
ENSE00001136249
chr4:
8305911-8306006
96
HTRA3_HUMAN
367-399
33
2
A:367-399 (gaps)
B:367-399 (gaps)
33
33
1.10
ENST00000307358
10
ENSE00001136244
chr4:
8307698-8308838
1141
HTRA3_HUMAN
399-453
55
2
A:399-453
B:399-453
55
55
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2p3wa_ (A:)
1b: SCOP_d2p3wb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2p3wa_
A:
1b
d2p3wb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDZ_2_2p3wB01 (B:355-447)
1b: PFAM_PDZ_2_2p3wB02 (B:355-447)
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Clan
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PDZ-like
(184)
Family
:
PDZ_2
(11)
Homo sapiens (Human)
(3)
1a
PDZ_2-2p3wB01
B:355-447
1b
PDZ_2-2p3wB02
B:355-447
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Asym.Unit (43 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
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