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2P3O
Biol. Unit 2
Info
Asym.Unit (52 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DENGUE METHYLTRANSFERASE IN COMPLEX WITH 7MEGPPPA AND S-ADENOSYL-L-HOMOCYSTEINE
Authors
:
M. P. Egloff, Marseilles Structural Genomics Program @ Afmb (Ms
Date
:
09 Mar 07 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Vizier; Viral Enzymes Involved In Replication; Dengue Virus Methyltransferase; Structural Genomics; Marseilles Structural Genomics Program @ Afmb; Msgp, Viral Protein, Transferase
(Keyword Search:
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Reference
:
M. P. Egloff, E. Decroly, H. Malet, B. Selisko, D. Benarroch, F. Ferron B. Canard
Structural And Functional Analysis Of Methylation And 5'-Rn Sequence Requirements Of Short Capped Rnas By The Methyltransferase Domain Of Dengue Virus Ns5
J. Mol. Biol. V. 372 723 2007
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: P1-7-METHYLGUANOSINE-P3-ADENOSINE-... (GTAa)
3a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
GTA
2
Ligand/Ion
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE
3
SAH
2
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
4
SO4
18
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:34 , HIS A:52 , TRP A:64 , ARG A:68 , ARG A:246
BINDING SITE FOR RESIDUE SO4 A 1002
02
AC2
SOFTWARE
ARG A:38 , LYS A:42 , SER A:56 , ARG A:57 , ARG A:84
BINDING SITE FOR RESIDUE SO4 A 1003
03
AC3
SOFTWARE
LYS A:105 , HIS A:110 , SER A:150 , SER A:151 , ARG A:160
BINDING SITE FOR RESIDUE SO4 A 1004
04
AC4
SOFTWARE
HIS A:110 , GLU A:149 , SAH A:1001
BINDING SITE FOR RESIDUE SO4 A 1005
05
AC5
SOFTWARE
GLY A:109 , HIS A:110 , GLU A:111 , SAH A:1001
BINDING SITE FOR RESIDUE SO4 A 1006
06
AC6
SOFTWARE
VAL A:229 , SER A:230 , ASN A:233 , ARG A:237
BINDING SITE FOR RESIDUE SO4 A 1007
07
AC7
SOFTWARE
LYS A:29 , ARG A:57 , ARG A:212 , HOH A:1019
BINDING SITE FOR RESIDUE SO4 A 1008
08
AC8
SOFTWARE
GLU A:138 , ARG A:139 , HOH A:1018
BINDING SITE FOR RESIDUE SO4 A 1009
09
AC9
SOFTWARE
LYS A:30 , ARG A:212
BINDING SITE FOR RESIDUE SO4 A 1010
10
BC1
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , VAL A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , SO4 A:1005 , SO4 A:1006 , CIT A:1011 , HOH A:1035 , HOH A:1038
BINDING SITE FOR RESIDUE SAH A 1001
11
BC2
SOFTWARE
LYS A:105 , ASP A:131 , PHE A:133 , PHE A:134 , GLY A:159 , ARG A:160 , ARG A:163 , SAH A:1001
BINDING SITE FOR RESIDUE CIT A 1011
12
BC3
SOFTWARE
LYS A:14 , LEU A:17 , ASN A:18 , LEU A:20 , PHE A:25 , LYS A:29 , PRO A:108 , SER A:150 , SER A:151 , PRO A:152
BINDING SITE FOR RESIDUE GTA A 1012
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2p3oa_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
mRNA cap methylase
(41)
Protein domain
:
An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
(14)
Flavivirus (Dengue virus type 2) [TaxId: 12637]
(8)
1a
d2p3oa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2p3oA00 (A:7-264)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Dengue virus 2. Organism_taxid: 11060. Strain: type 2 new guinea.
(6)
1a
2p3oA00
A:7-264
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_FtsJ_2p3oA01 (A:54-224)
2a: PFAM_Flavi_NS5_2p3oA02 (A:251-264)
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Clan
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NADP_Rossmann
(1239)
Family
:
FtsJ
(23)
Dengue virus 2
(5)
1a
FtsJ-2p3oA01
A:54-224
Clan
:
RdRP
(210)
Family
:
Flavi_NS5
(21)
Dengue virus 2
(5)
2a
Flavi_NS5-2p3oA02
A:251-264
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Show PDB file:
Asym.Unit (52 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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