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2P3I
Asym. Unit
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Biol.Unit 1 (31 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RHESUS ROTAVIRUS VP8* AT 295K
Authors
:
H. Blanchard
Date
:
09 Mar 07 (Deposition) - 11 Mar 08 (Release) - 08 Dec 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Sandwich, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Kraschnefski, A. Bugarcic, F. E. Fleming, X. Yu, M. Von Itzstein B. S. Coulson, H. Blanchard
Effects On Sialic Acid Recognition Of Amino Acid Mutations In The Carbohydrate-Binding Cleft Of The Rotavirus Spike Protein
Glycobiology V. 19 194 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-O-METHYL-5-N-ACETYL-ALPHA-D- NEU... (MNAa)
2a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MNA
1
Ligand/Ion
2-O-METHYL-5-N-ACETYL-ALPHA-D- NEURAMINIC ACID
2
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:134 , GLN A:135 , THR A:136 , HOH A:3069
BINDING SITE FOR RESIDUE SO4 A 3000
2
AC2
SOFTWARE
ARG A:101 , ASN A:111 , THR A:113 , ASN A:132 , ALA A:133 , THR A:146 , TYR A:155 , TYR A:188 , TYR A:189 , SER A:190 , HOH A:3007 , HOH A:3053 , HOH A:3056 , HOH A:3101 , HOH A:3118 , HOH A:3130 , HOH A:3131
BINDING SITE FOR RESIDUE MNA A 1000
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_VP4_ROTRH_001 (T146S, chain A, )
2: VAR_VP4_ROTRH_002 (A166G, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_VP4_ROTRH_001
*
T
146
S
VP4_ROTRH
---
---
A
T
146
S
2
UniProt
VAR_VP4_ROTRH_002
*
A
166
G
VP4_ROTRH
---
---
A
A
166
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2p3ia_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
vp4 sialic acid binding domain
(10)
Protein domain
:
vp4 sialic acid binding domain
(6)
Rhesus rotavirus [TaxId: 10969]
(6)
1a
d2p3ia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2p3iA00 (A:64-224)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Rhesus rotavirus. Organism_taxid: 10969. Strain: rhesus.
(3)
1a
2p3iA00
A:64-224
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_VP4_haemagglut_2p3iA01 (A:64-224)
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Clans
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(
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(
)
Clan
:
no clan defined [family: VP4_haemagglut]
(5)
Family
:
VP4_haemagglut
(5)
Rotavirus A (strain Monkey/United States/RRV/1980 G3-P5B[3]-I2-R2-C3-M3-A9-Nx-T3-E3-H6) (RV-A)
(5)
1a
VP4_haemagglut-2p3iA01
A:64-224
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Asym.Unit (35 KB)
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