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2P2N
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (207 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AND ALLOSTERIC REGULATION OF THE CYTOPLASMIC ESCHERICHIA COLI L-ASPARAGINASE I
Authors
:
M. -K. Yun, A. Nourse, S. W. White, C. O. Rock, R. J. Heath
Date
:
07 Mar 07 (Deposition) - 15 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Asparaginase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. -K. Yun, A. Nourse, S. W. White, C. O. Rock, R. J. Heath
Crystal Structure And Allosteric Regulation Of The Cytoplasmic Escherichia Colil-Asparaginase I
J. Mol. Biol. V. 369 794 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: ASPARAGINE (ASNa)
1b: ASPARAGINE (ASNb)
1c: ASPARAGINE (ASNc)
1d: ASPARAGINE (ASNd)
1e: ASPARAGINE (ASNe)
1f: ASPARAGINE (ASNf)
1g: ASPARAGINE (ASNg)
1h: ASPARAGINE (ASNh)
2a: ASPARTIC ACID (ASPa)
2b: ASPARTIC ACID (ASPb)
2c: ASPARTIC ACID (ASPc)
2d: ASPARTIC ACID (ASPd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
4l: 1,2-ETHANEDIOL (EDOl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASN
8
Mod. Amino Acid
ASPARAGINE
2
ASP
4
Mod. Amino Acid
ASPARTIC ACID
3
CL
4
Ligand/Ion
CHLORIDE ION
4
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:275 , ASP C:167 , GLY C:168
BINDING SITE FOR RESIDUE CL A 1001
02
AC2
SOFTWARE
HIS A:165 , ASP A:167 , GLY A:168 , SER C:275
BINDING SITE FOR RESIDUE CL A 1002
03
AC3
SOFTWARE
SER B:275 , HOH B:9146 , ALA D:166 , ASP D:167 , GLY D:168
BINDING SITE FOR RESIDUE CL B 1003
04
AC4
SOFTWARE
HIS B:165 , ALA B:166 , ASP B:167 , GLY B:168 , SER D:275
BINDING SITE FOR RESIDUE CL B 1004
05
AC5
SOFTWARE
GLY A:13 , THR A:14 , ASP A:59 , SER A:60 , GLY A:90 , THR A:91 , ASP A:92 , SER A:117 , HOH A:9136 , ASN C:246
BINDING SITE FOR RESIDUE ASP A 7001
06
AC6
SOFTWARE
GLY A:13 , THR A:14 , MET A:17 , ASP A:59 , SER A:60 , SER A:61 , GLY A:90 , THR A:91 , ASP A:92 , ASN C:246
BINDING SITE FOR RESIDUE ASN A 7002
07
AC7
SOFTWARE
THR A:162 , ARG A:240 , THR A:271 , GLN A:272 , CYS A:273 , THR A:301 , VAL A:302 , GLU A:303 , EDO A:9002 , HOH A:9041 , HOH A:9071 , ARG C:240 , EDO C:9010
BINDING SITE FOR RESIDUE ASN A 8001
08
AC8
SOFTWARE
ASN A:176 , THR A:271 , CYS A:273 , MET A:274 , SER A:275 , GLY A:276 , ASP A:299 , MET A:300 , THR A:301 , ASN A:8001
BINDING SITE FOR RESIDUE EDO A 9002
09
AC9
SOFTWARE
ARG A:240 , GLN A:272 , TYR C:96 , ARG C:240 , VAL C:302 , GLU C:303 , ASN C:8003 , HOH C:9060
BINDING SITE FOR RESIDUE EDO A 9005
10
BC1
SOFTWARE
ASP B:59 , SER B:60 , GLY B:90 , THR B:91 , ASP B:92 , SER B:117 , ASN D:246
BINDING SITE FOR RESIDUE ASP B 7003
11
BC2
SOFTWARE
GLY B:13 , ASP B:59 , SER B:60 , SER B:61 , GLY B:90 , THR B:91 , ASP B:92 , ASN D:246
BINDING SITE FOR RESIDUE ASN B 7004
12
BC3
SOFTWARE
THR B:162 , ARG B:240 , THR B:271 , GLN B:272 , CYS B:273 , THR B:301 , VAL B:302 , GLU B:303 , EDO B:9004 , HOH B:9142 , ARG D:240 , EDO D:9012 , HOH D:9111
BINDING SITE FOR RESIDUE ASN B 8002
13
BC4
SOFTWARE
ASN B:176 , THR B:271 , CYS B:273 , MET B:274 , SER B:275 , GLY B:276 , ASP B:299 , MET B:300 , THR B:301 , ASN B:8002
BINDING SITE FOR RESIDUE EDO B 9004
14
BC5
SOFTWARE
HIS B:0 , LYS B:3 , PRO B:44 , GLU B:45
BINDING SITE FOR RESIDUE EDO B 9008
15
BC6
SOFTWARE
ARG B:240 , GLN B:272 , TYR D:96 , ARG D:240 , VAL D:302 , ASN D:8004 , HOH D:9017
BINDING SITE FOR RESIDUE EDO B 9009
16
BC7
SOFTWARE
ASN A:246 , ASP C:59 , SER C:60 , GLY C:90 , THR C:91 , ASP C:92 , SER C:117 , HOH C:9135
BINDING SITE FOR RESIDUE ASP C 7005
17
BC8
SOFTWARE
ASN A:246 , GLY C:13 , ASP C:59 , SER C:60 , SER C:61 , GLY C:90 , THR C:91 , ASP C:92
BINDING SITE FOR RESIDUE ASN C 7006
18
BC9
SOFTWARE
ARG A:240 , EDO A:9005 , THR C:162 , ARG C:240 , THR C:271 , GLN C:272 , CYS C:273 , MET C:274 , THR C:301 , VAL C:302 , GLU C:303 , EDO C:9001 , HOH C:9045 , HOH C:9050
BINDING SITE FOR RESIDUE ASN C 8003
19
CC1
SOFTWARE
ASN C:176 , THR C:271 , CYS C:273 , MET C:274 , SER C:275 , GLY C:276 , ASP C:299 , MET C:300 , THR C:301 , ASN C:8003
BINDING SITE FOR RESIDUE EDO C 9001
20
CC2
SOFTWARE
TYR A:96 , ARG A:240 , VAL A:302 , GLU A:303 , ASN A:8001 , HOH A:9065 , ARG C:240 , GLN C:272
BINDING SITE FOR RESIDUE EDO C 9010
21
CC3
SOFTWARE
ASN B:246 , GLY D:13 , ASP D:59 , SER D:60 , GLY D:90 , THR D:91 , ASP D:92 , SER D:117 , EDO D:9006 , HOH D:9161
BINDING SITE FOR RESIDUE ASP D 7007
22
CC4
SOFTWARE
ASN B:246 , GLY D:13 , ASP D:59 , SER D:60 , SER D:61 , GLY D:90 , THR D:91 , ASP D:92
BINDING SITE FOR RESIDUE ASN D 7008
23
CC5
SOFTWARE
ARG B:240 , EDO B:9009 , HOH B:9101 , THR D:162 , ARG D:240 , THR D:271 , GLN D:272 , CYS D:273 , THR D:301 , VAL D:302 , GLU D:303 , EDO D:9003 , HOH D:9041
BINDING SITE FOR RESIDUE ASN D 8004
24
CC6
SOFTWARE
ASN D:176 , THR D:271 , CYS D:273 , MET D:274 , SER D:275 , GLY D:276 , ASP D:299 , MET D:300 , THR D:301 , ASN D:8004
BINDING SITE FOR RESIDUE EDO D 9003
25
CC7
SOFTWARE
GLY B:243 , VAL B:244 , ASN B:246 , ILE C:185 , ASP D:92 , GLN D:118 , LYS D:163 , ALA D:166 , ASP D:7007
BINDING SITE FOR RESIDUE EDO D 9006
26
CC8
SOFTWARE
PRO D:-4 , ASN D:145 , HIS D:197
BINDING SITE FOR RESIDUE EDO D 9007
27
CC9
SOFTWARE
HIS D:0 , LYS D:3 , PRO D:44 , GLU D:45
BINDING SITE FOR RESIDUE EDO D 9011
28
DC1
SOFTWARE
TYR B:96 , ARG B:240 , ASN B:8002 , ARG D:240 , GLN D:272 , HOH D:9111 , HOH D:9156
BINDING SITE FOR RESIDUE EDO D 9012
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ASN_GLN_ASE_3 (A:4-329,B:4-329,C:4-329,D:4-329)
2: ASN_GLN_ASE_1 (A:8-16,B:8-13,C:8-13,D:8-13)
3: ASN_GLN_ASE_2 (A:84-94,B:84-94,C:84-94,D:84-94)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASN_GLN_ASE_3
PS51732
Asparaginase / glutaminase domain profile.
ASPG1_ECOLI
4-329
4
A:4-329
B:4-329
C:4-329
D:4-329
2
ASN_GLN_ASE_1
PS00144
Asparaginase / glutaminase active site signature 1.
ASPG1_ECOLI
8-16
4
A:8-16
B:8-13
C:8-13
D:8-13
3
ASN_GLN_ASE_2
PS00917
Asparaginase / glutaminase active site signature 2.
ASPG1_ECOLI
84-94
4
A:84-94
B:84-94
C:84-94
D:84-94
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2p2na_ (A:)
1b: SCOP_d2p2nc_ (C:)
1c: SCOP_d2p2nd_ (D:)
1d: SCOP_d2p2nb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Glutaminase/Asparaginase
(37)
Superfamily
:
Glutaminase/Asparaginase
(37)
Family
:
Glutaminase/Asparaginase
(33)
Protein domain
:
automated matches
(9)
Escherichia coli [TaxId: 562]
(3)
1a
d2p2na_
A:
1b
d2p2nc_
C:
1c
d2p2nd_
D:
1d
d2p2nb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Asparaginase_2p2nD01 (D:5-323)
1b: PFAM_Asparaginase_2p2nD02 (D:5-323)
1c: PFAM_Asparaginase_2p2nD03 (D:5-323)
1d: PFAM_Asparaginase_2p2nD04 (D:5-323)
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Clans
(
)
(
)
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(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Asparaginase]
(13)
Family
:
Asparaginase
(13)
Escherichia coli (strain K12)
(4)
1a
Asparaginase-2p2nD01
D:5-323
1b
Asparaginase-2p2nD02
D:5-323
1c
Asparaginase-2p2nD03
D:5-323
1d
Asparaginase-2p2nD04
D:5-323
[
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]
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