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Getting 'Biological Unit' information from database.
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2P2L
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (202 KB)
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(1)
Title
:
RAC1-GDP-ZINC COMPLEX
Authors
:
G. Prehna, C. E. Stebbins
Date
:
07 Mar 07 (Deposition) - 01 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Rho Family Gtpase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Prehna, C. E. Stebbins
A Rac1-Gdp Trimer Complex Binds Zinc With Tetrahedral And Octahedral Coordination, Displacing Magnesium.
Acta Crystallogr. , Sect. D V. 63 628 2007
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
3
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:17 , THR A:35 , GDP A:200 , HOH A:915 , HOH A:1114 , HOH A:1148
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
ASP A:63 , GLU A:100 , HIS A:103 , HIS A:104
BINDING SITE FOR RESIDUE ZN A 202
03
AC3
SOFTWARE
THR B:17 , THR B:35 , GDP B:200 , HOH B:412 , HOH B:421 , HOH B:431
BINDING SITE FOR RESIDUE ZN B 201
04
AC4
SOFTWARE
ASP B:63 , GLU B:100 , HIS B:104 , HIS C:103
BINDING SITE FOR RESIDUE ZN B 202
05
AC5
SOFTWARE
THR C:17 , THR C:35 , GDP C:200 , HOH C:424 , HOH C:434 , HOH C:443
BINDING SITE FOR RESIDUE ZN C 201
06
AC6
SOFTWARE
HIS B:103 , ASP C:63 , GLU C:100 , HIS C:104
BINDING SITE FOR RESIDUE ZN C 202
07
AC7
SOFTWARE
ASP A:38 , HOH A:1125 , ASP B:38 , ASP C:38
BINDING SITE FOR RESIDUE ZN A 901
08
AC8
SOFTWARE
GLU A:127 , GLU A:131 , GLU C:127 , GLU C:131
BINDING SITE FOR RESIDUE ZN A 902
09
AC9
SOFTWARE
ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , ILE A:33 , LYS A:116 , ASP A:118 , LEU A:119 , SER A:158 , ALA A:159 , LEU A:160 , ZN A:201 , HOH A:908 , HOH A:915 , HOH A:929 , HOH A:965 , HOH A:977 , HOH A:1024 , HOH A:1030 , HOH A:1073 , HOH A:1114 , HOH A:1148
BINDING SITE FOR RESIDUE GDP A 200
10
BC1
SOFTWARE
ASN A:43 , ASP B:11 , ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , ILE B:33 , LYS B:116 , ASP B:118 , LEU B:119 , SER B:158 , ALA B:159 , LEU B:160 , ZN B:201 , HOH B:204 , HOH B:207 , HOH B:222 , HOH B:239 , HOH B:282 , HOH B:333 , HOH B:343 , HOH B:412 , HOH B:421 , HOH B:431 , HOH B:453
BINDING SITE FOR RESIDUE GDP B 200
11
BC2
SOFTWARE
ASN B:43 , ALA C:13 , VAL C:14 , GLY C:15 , LYS C:16 , THR C:17 , CYS C:18 , PHE C:28 , ILE C:33 , LYS C:116 , ASP C:118 , LEU C:119 , SER C:158 , ALA C:159 , LEU C:160 , ZN C:201 , HOH C:204 , HOH C:209 , HOH C:228 , HOH C:270 , HOH C:303 , HOH C:330 , HOH C:337 , HOH C:354 , HOH C:424 , HOH C:434 , HOH C:443
BINDING SITE FOR RESIDUE GDP C 200
[
close Site info
]
SAPs(SNPs)/Variants
(10, 30)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_014540 (N26D, chain A/B/C, )
02: VAR_014541 (F28L, chain A/B/C, )
03: VAR_014542 (A59T, chain A/B/C, )
04: VAR_014543 (D63G, chain A/B/C, )
05: VAR_014545 (V93G, chain A/B/C, )
06: VAR_014544 (V93I, chain A/B/C, )
07: VAR_014546 (T108I, chain A/B/C, )
08: VAR_014547 (K130R, chain A/B/C, )
09: VAR_014548 (K133E, chain A/B/C, )
10: VAR_033303 (T135I, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
A/B/C
N
26
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
A/B/C
F
28
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
A/B/C
A
59
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
A/B/C
D
63
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
A/B/C
V
93
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
A/B/C
V
93
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
A/B/C
T
108
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
A/B/C
K
130
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
A/B/C
K
133
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
A/B/C
T
135
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RHO (A:1-176,B:1-176,C:1-176)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
3
A:1-176
B:1-176
C:1-176
[
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Exons
(6, 18)
Info
All Exons
Exon 1.1a (A:1-12 | B:1-12 | C:1-12)
Exon 1.3 (A:12-36 | B:12-36 | C:12-36)
Exon 1.5 (A:36-75 (gaps) | B:36-75 (gaps) | ...)
Exon 1.7b (A:76-96 | B:76-96 | C:76-96)
Exon 1.8b (A:97-150 | B:97-150 | C:97-150)
Exon 1.9f (A:150-179 | B:150-179 | C:150-179)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.3
3: Boundary 1.3/1.5
4: Boundary 1.5/1.7b
5: Boundary 1.7b/1.8b
6: Boundary 1.8b/1.9f
7: Boundary 1.9f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000348035
1a
ENSE00001876788
chr7:
6414154-6414401
248
RAC1_HUMAN
1-12
12
3
A:1-12
B:1-12
C:1-12
12
12
12
1.3
ENST00000348035
3
ENSE00001676753
chr7:
6426843-6426914
72
RAC1_HUMAN
12-36
25
3
A:12-36
B:12-36
C:12-36
25
25
25
1.5
ENST00000348035
5
ENSE00001643043
chr7:
6431555-6431672
118
RAC1_HUMAN
36-75
40
3
A:36-75 (gaps)
B:36-75 (gaps)
C:36-75
40
40
40
1.7b
ENST00000348035
7b
ENSE00000831659
chr7:
6439757-6439819
63
RAC1_HUMAN
76-96
21
3
A:76-96
B:76-96
C:76-96
21
21
21
1.8b
ENST00000348035
8b
ENSE00001637705
chr7:
6441499-6441658
160
RAC1_HUMAN
97-150
54
3
A:97-150
B:97-150
C:97-150
54
54
54
1.9f
ENST00000348035
9f
ENSE00001551063
chr7:
6441947-6443608
1662
RAC1_HUMAN
150-192
43
3
A:150-179
B:150-179
C:150-179
30
30
30
[
close EXON info
]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2p2la_ (A:)
1b: SCOP_d2p2lb_ (B:)
1c: SCOP_d2p2lc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Rac
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d2p2la_
A:
1b
d2p2lb_
B:
1c
d2p2lc_
C:
[
close SCOP info
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2p2lC00 (C:1-179)
1b: CATH_2p2lB00 (B:1-179)
1c: CATH_2p2lA00 (A:1-179)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2p2lC00
C:1-179
1b
2p2lB00
B:1-179
1c
2p2lA00
A:1-179
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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