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2P2K
Asym. Unit
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Asym.Unit (160 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A LECTIN FROM CANAVALIA GLADIATA SEEDS (CGL) IN COMPLEX WITH MAN1-4MAN-OME
Authors
:
F. B. M. B. Moreno, G. A. Bezerra, T. M. Oliveira, E. P. Souza, B. A. M. Rocha, G. B. Benevides, P. Delatorre, B. S. Cavada, W. F. De Azevedo Jr.
Date
:
07 Mar 07 (Deposition) - 23 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,O
#
,P
#
,Q
#
,R
#
Biol. Unit 1: A,B,C,D (1x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
Dimannoside, Man1-4Man-Ome, Canavalia Gladiata Lectin, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Bezerra, T. M. Oliveira, F. B. Moreno, E. P. De Souza, B. A. Da Rocha, R. G. Benevides, P. Delatorre, W. F. De Azevedo, B. S. Cavada
Structural Analysis Of Canavalia Maritima And Canavalia Gladiata Lectins Complexed With Different Dimannosides: New Insights Into The Understanding Of The Structure-Biological Activity Relationship In Legume Lectins.
J. Struct. Biol. V. 160 168 2007
(for further references see the
PDB file header
)
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: O1-METHYL-MANNOSE (MMAa)
3b: O1-METHYL-MANNOSE (MMAb)
3c: O1-METHYL-MANNOSE (MMAc)
3d: O1-METHYL-MANNOSE (MMAd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
4d: MANGANESE (II) ION (MNd)
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No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
MMA
4
Ligand/Ion
O1-METHYL-MANNOSE
4
MN
4
Ligand/Ion
MANGANESE (II) ION
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Sites
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2p2ka_ (A:)
1b: SCOP_d2p2kb_ (B:)
1c: SCOP_d2p2kc_ (C:)
1d: SCOP_d2p2kd_ (D:)
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(
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
automated matches
(63)
Canavalia gladiata [TaxId: 3824]
(5)
1a
d2p2ka_
A:
1b
d2p2kb_
B:
1c
d2p2kc_
C:
1d
d2p2kd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2p2kA00 (A:1-237)
1b: CATH_2p2kB00 (B:1-237)
1c: CATH_2p2kC00 (C:1-237)
1d: CATH_2p2kD00 (D:1-237)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Sword bean (Canavalia gladiata)
(5)
1a
2p2kA00
A:1-237
1b
2p2kB00
B:1-237
1c
2p2kC00
C:1-237
1d
2p2kD00
D:1-237
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_2p2kD01 (D:124-237)
1b: PFAM_Lectin_legB_2p2kD02 (D:124-237)
1c: PFAM_Lectin_legB_2p2kD03 (D:124-237)
1d: PFAM_Lectin_legB_2p2kD04 (D:124-237)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Canavalia gladiata (Sword bean) (Dolichos gladiatus)
(3)
1a
Lectin_legB-2p2kD01
D:124-237
1b
Lectin_legB-2p2kD02
D:124-237
1c
Lectin_legB-2p2kD03
D:124-237
1d
Lectin_legB-2p2kD04
D:124-237
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Asymmetric Unit 1
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