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2P2G
Asym. Unit
Info
Asym.Unit (280 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (139 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS (RV1656): ORTHORHOMBIC FORM
Authors
:
R. Sankaranarayanan, M. M. Cherney, L. T. Cherney, C. Garen, F. Moradia M. N. G. James, Tb Structural Genomics Consortium (Tbsgc)
Date
:
07 Mar 07 (Deposition) - 03 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Mycobacterium Tuberculosis, Ornithine Carbamyoltransferase, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sankaranarayanan, M. M. Cherney, L. T. Cherney, C. R. Garen, F. Moradian, M. N. James
The Crystal Structures Of Ornithine Carbamoyltransferase From Mycobacterium Tuberculosis And Its Ternary Complex Wit Carbamoyl Phosphate And L-Norvaline Reveal The Enzyme'S Catalytic Mechanism.
J. Mol. Biol. V. 375 1052 2008
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
16
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:50 , THR A:51 , ARG A:52 , PRO A:266
BINDING SITE FOR RESIDUE SO4 A 800
02
AC2
SOFTWARE
ASN A:248 , SER A:249 , THR A:274 , ALA A:276
BINDING SITE FOR RESIDUE SO4 A 801
03
AC3
SOFTWARE
SER B:50 , THR B:51 , ARG B:52 , HOH C:818
BINDING SITE FOR RESIDUE SO4 B 800
04
AC4
SOFTWARE
ASN B:248 , SER B:249 , THR B:274
BINDING SITE FOR RESIDUE SO4 B 801
05
AC5
SOFTWARE
ASP A:72 , GLY A:74 , ASP B:72 , GLY B:74 , ASP C:72 , GLY C:74
BINDING SITE FOR RESIDUE SO4 B 802
06
AC6
SOFTWARE
ARG A:54 , ASP A:72 , ARG B:54 , ARG C:54
BINDING SITE FOR RESIDUE SO4 B 803
07
AC7
SOFTWARE
SER C:50 , THR C:51 , ARG C:52 , PRO C:266
BINDING SITE FOR RESIDUE SO4 C 800
08
AC8
SOFTWARE
ASN C:248 , SER C:249 , THR C:274 , ALA C:276 , HOH C:814 , HOH C:834 , ARG E:250
BINDING SITE FOR RESIDUE SO4 C 801
09
AC9
SOFTWARE
HIS A:67 , HIS B:67 , GLY C:66 , HIS C:67
BINDING SITE FOR RESIDUE SO4 C 805
10
BC1
SOFTWARE
SER D:50 , THR D:51 , ARG D:52 , PRO D:266
BINDING SITE FOR RESIDUE SO4 D 800
11
BC2
SOFTWARE
ASN D:248 , SER D:249 , THR D:274 , ALA D:276
BINDING SITE FOR RESIDUE SO4 D 801
12
BC3
SOFTWARE
SER E:50 , THR E:51 , ARG E:52 , PRO E:266
BINDING SITE FOR RESIDUE SO4 E 800
13
BC4
SOFTWARE
ASN E:248 , SER E:249 , THR E:274
BINDING SITE FOR RESIDUE SO4 E 801
14
BC5
SOFTWARE
SER F:50 , THR F:51 , ARG F:52
BINDING SITE FOR RESIDUE SO4 F 800
15
BC6
SOFTWARE
ASN F:248 , SER F:249 , THR F:274 , ALA F:276 , HOH F:813
BINDING SITE FOR RESIDUE SO4 F 801
16
BC7
SOFTWARE
ARG D:54 , ARG E:54 , ARG F:54
BINDING SITE FOR RESIDUE SO4 F 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:46-53,B:46-53,C:46-53,D:46-53,E:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
OTC_MYCTO
46-53
6
A:46-53
B:46-53
C:46-53
D:46-53
E:46-53
F:46-53
OTC_MYCTU
46-53
6
A:46-53
B:46-53
C:46-53
D:46-53
E:46-53
F:46-53
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2p2ga1 (A:1-143)
1b: SCOP_d2p2ga2 (A:144-307)
1c: SCOP_d2p2gf1 (F:1-143)
1d: SCOP_d2p2gf2 (F:144-307)
1e: SCOP_d2p2gb1 (B:1-143)
1f: SCOP_d2p2gb2 (B:144-307)
1g: SCOP_d2p2gc1 (C:1-143)
1h: SCOP_d2p2gc2 (C:144-307)
1i: SCOP_d2p2gd1 (D:1-143)
1j: SCOP_d2p2gd2 (D:144-307)
1k: SCOP_d2p2ge1 (E:1-143)
1l: SCOP_d2p2ge2 (E:144-307)
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Protein Domains
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
automated matches
(35)
Protein domain
:
automated matches
(35)
Mycobacterium tuberculosis [TaxId: 83332]
(1)
1a
d2p2ga1
A:1-143
1b
d2p2ga2
A:144-307
1c
d2p2gf1
F:1-143
1d
d2p2gf2
F:144-307
1e
d2p2gb1
B:1-143
1f
d2p2gb2
B:144-307
1g
d2p2gc1
C:1-143
1h
d2p2gc2
C:144-307
1i
d2p2gd1
D:1-143
1j
d2p2gd2
D:144-307
1k
d2p2ge1
E:1-143
1l
d2p2ge2
E:144-307
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2p2gA01 (A:1-130,A:292-307)
1b: CATH_2p2gB01 (B:1-130,B:292-307)
1c: CATH_2p2gD02 (D:131-291)
1d: CATH_2p2gF02 (F:131-291)
1e: CATH_2p2gC01 (C:1-130,C:292-307)
1f: CATH_2p2gD01 (D:1-130,D:292-307)
1g: CATH_2p2gE01 (E:1-130,E:292-307)
1h: CATH_2p2gF01 (F:1-130,F:292-307)
1i: CATH_2p2gE02 (E:131-291)
1j: CATH_2p2gC02 (C:131-291)
1k: CATH_2p2gA02 (A:131-291)
1l: CATH_2p2gB02 (B:131-291)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Mycobacterium tuberculosis h37rv. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
2p2gA01
A:1-130,A:292-307
1b
2p2gB01
B:1-130,B:292-307
1c
2p2gD02
D:131-291
1d
2p2gF02
F:131-291
1e
2p2gC01
C:1-130,C:292-307
1f
2p2gD01
D:1-130,D:292-307
1g
2p2gE01
E:1-130,E:292-307
1h
2p2gF01
F:1-130,F:292-307
1i
2p2gE02
E:131-291
1j
2p2gC02
C:131-291
1k
2p2gA02
A:131-291
1l
2p2gB02
B:131-291
[
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_OTCace_2p2gF01 (F:147-303)
1b: PFAM_OTCace_2p2gF02 (F:147-303)
1c: PFAM_OTCace_2p2gF03 (F:147-303)
1d: PFAM_OTCace_2p2gF04 (F:147-303)
1e: PFAM_OTCace_2p2gF05 (F:147-303)
1f: PFAM_OTCace_2p2gF06 (F:147-303)
2a: PFAM_OTCace_N_2p2gF07 (F:3-142)
2b: PFAM_OTCace_N_2p2gF08 (F:3-142)
2c: PFAM_OTCace_N_2p2gF09 (F:3-142)
2d: PFAM_OTCace_N_2p2gF10 (F:3-142)
2e: PFAM_OTCace_N_2p2gF11 (F:3-142)
2f: PFAM_OTCace_N_2p2gF12 (F:3-142)
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Clans
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(
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(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: OTCace]
(48)
Family
:
OTCace
(48)
Mycobacterium tuberculosis
(1)
1a
OTCace-2p2gF01
F:147-303
1b
OTCace-2p2gF02
F:147-303
1c
OTCace-2p2gF03
F:147-303
1d
OTCace-2p2gF04
F:147-303
1e
OTCace-2p2gF05
F:147-303
1f
OTCace-2p2gF06
F:147-303
Clan
:
no clan defined [family: OTCace_N]
(48)
Family
:
OTCace_N
(48)
Mycobacterium tuberculosis
(1)
2a
OTCace_N-2p2gF07
F:3-142
2b
OTCace_N-2p2gF08
F:3-142
2c
OTCace_N-2p2gF09
F:3-142
2d
OTCace_N-2p2gF10
F:3-142
2e
OTCace_N-2p2gF11
F:3-142
2f
OTCace_N-2p2gF12
F:3-142
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