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2P2F
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
ACETYL-COA SYNTHETASE, WILD-TYPE WITH ACETATE, AMP, AND COA BOUND
Authors
:
A. S. Reger, A. M. Gulick
Date
:
07 Mar 07 (Deposition) - 29 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.58
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Adenylate-Forming Enzymes, Domain Alternation, Acyl-Coa Ligase, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. S. Reger, J. M. Carney, A. M. Gulick
Biochemical And Crystallographic Analysis Of Substrate Binding And Conformational Changes In Acetyl-Coa Synthetase
Biochemistry V. 46 6536 2007
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: ADENOSINE MONOPHOSPHATE (AMPa)
2b: ADENOSINE MONOPHOSPHATE (AMPb)
3a: COENZYME A (COAa)
3b: COENZYME A (COAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
AMP
2
Ligand/Ion
ADENOSINE MONOPHOSPHATE
3
COA
2
Ligand/Ion
COENZYME A
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:311 , VAL A:386 , GLY A:387 , COA A:990 , AMP A:999
BINDING SITE FOR RESIDUE ACT A 653
2
AC2
SOFTWARE
VAL B:310 , THR B:311 , GLY B:387 , COA B:991 , AMP B:998 , HOH B:1064
BINDING SITE FOR RESIDUE ACT B 653
3
AC3
SOFTWARE
PHE A:163 , ARG A:191 , ASP A:306 , TRP A:309 , THR A:311 , ALA A:357 , THR A:359 , ALA A:360 , SER A:523 , GLY A:524 , ARG A:584 , PRO A:589 , ACT A:653
BINDING SITE FOR RESIDUE COA A 990
4
AC4
SOFTWARE
PHE B:163 , GLY B:164 , GLY B:165 , ARG B:191 , ILE B:196 , ASP B:306 , PRO B:334 , ALA B:357 , SER B:523 , HIS B:525 , ARG B:584 , PRO B:589 , ACT B:653
BINDING SITE FOR RESIDUE COA B 991
5
AC5
SOFTWARE
GLY A:387 , GLU A:388 , PRO A:389 , ASP A:411 , THR A:412 , TRP A:413 , TRP A:414 , GLN A:415 , THR A:416 , ASP A:500 , ILE A:512 , ARG A:515 , ASN A:521 , ARG A:526 , ACT A:653
BINDING SITE FOR RESIDUE AMP A 999
6
AC6
SOFTWARE
VAL B:310 , GLY B:387 , GLU B:388 , PRO B:389 , ASP B:411 , THR B:412 , TRP B:413 , TRP B:414 , GLN B:415 , THR B:416 , ASP B:500 , ILE B:512 , ARG B:515 , ARG B:526 , ACT B:653 , HOH B:1064
BINDING SITE FOR RESIDUE AMP B 998
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMP_BINDING (A:261-272,B:261-272)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMP_BINDING
PS00455
Putative AMP-binding domain signature.
ACSA_SALTY
261-272
2
A:261-272
B:261-272
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2p2fa_ (A:)
1b: SCOP_d2p2fb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acetyl-CoA synthetase-like
(64)
Superfamily
:
Acetyl-CoA synthetase-like
(64)
Family
:
Acetyl-CoA synthetase-like
(38)
Protein domain
:
Acetyl-CoA synthetase
(9)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d2p2fa_
A:
1b
d2p2fb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2p2fB02 (B:518-647)
1b: CATH_2p2fA02 (A:518-647)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.30, no name defined]
(30)
Salmonella typhimurium. Organism_taxid: 602. Strain: typhi.
(6)
1a
2p2fB02
B:518-647
1b
2p2fA02
A:518-647
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_AMP_binding_2p2fB01 (B:109-547)
1b: PFAM_AMP_binding_2p2fB02 (B:109-547)
2a: PFAM_DUF3448_2p2fB03 (B:17-102)
2b: PFAM_DUF3448_2p2fB04 (B:17-102)
3a: PFAM_DUF4009_2p2fB05 (B:590-634)
3b: PFAM_DUF4009_2p2fB06 (B:590-634)
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Clan
:
ANL
(32)
Family
:
AMP-binding
(32)
Salmonella typhimurium
(7)
1a
AMP-binding-2p2fB01
B:109-547
1b
AMP-binding-2p2fB02
B:109-547
Clan
:
no clan defined [family: DUF3448]
(8)
Family
:
DUF3448
(8)
Salmonella typhimurium
(7)
2a
DUF3448-2p2fB03
B:17-102
2b
DUF3448-2p2fB04
B:17-102
Clan
:
no clan defined [family: DUF4009]
(14)
Family
:
DUF4009
(14)
Salmonella typhimurium
(7)
3a
DUF4009-2p2fB05
B:590-634
3b
DUF4009-2p2fB06
B:590-634
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Asym.Unit (210 KB)
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