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2P2D
Asym. Unit
Info
Asym.Unit (223 KB)
Biol.Unit 1 (217 KB)
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(1)
Title
:
CRYSTAL STRUCTURE AND ALLOSTERIC REGULATION OF THE CYTOPLASMIC ESCHERICHIA COLI L-ASPARAGINASE I
Authors
:
M. -K. Yun, A. Nourse, S. W. White, C. O. Rock, R. J. Heath
Date
:
07 Mar 07 (Deposition) - 15 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Asparaginase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. -K. Yun, A. Nourse, S. W. White, C. O. Rock, R. J. Heath
Crystal Structure And Allosteric Regulation Of The Cytoplasmic Escherichia Colil-Asparaginase I
J. Mol. Biol. V. 369 794 2007
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:102 , LEU A:105 , ASN A:107 , LEU A:108 , PRO A:196 , ARG A:331 , HOH A:9027 , HOH A:9030 , HOH A:9098
BINDING SITE FOR RESIDUE GOL A 7001
02
AC2
SOFTWARE
ASN C:176 , THR C:271 , MET C:274 , SER C:275 , GLY C:276 , MET C:300 , HOH C:9014 , HOH C:9121
BINDING SITE FOR RESIDUE GOL C 7002
03
AC3
SOFTWARE
SER C:102 , LEU C:105 , LEU C:108 , PRO C:196 , ARG C:331 , HOH C:9038 , HOH C:9052 , HOH C:9089
BINDING SITE FOR RESIDUE GOL C 7003
04
AC4
SOFTWARE
ARG A:240 , THR A:271 , CYS A:273 , MET A:300 , VAL A:302 , HOH A:9017 , HOH A:9059
BINDING SITE FOR RESIDUE GOL A 7004
05
AC5
SOFTWARE
SER D:102 , LEU D:105 , ASN D:107 , LEU D:108 , PRO D:196 , ARG D:331 , HOH D:9031 , HOH D:9038 , HOH D:9044
BINDING SITE FOR RESIDUE GOL D 7005
06
AC6
SOFTWARE
ASN D:176 , MET D:274 , SER D:275 , GLY D:276 , MET D:300 , HOH D:9025 , HOH D:9116
BINDING SITE FOR RESIDUE GOL D 7006
07
AC7
SOFTWARE
SER B:102 , LEU B:105 , LEU B:108 , PRO B:196 , ARG B:331 , HOH B:9048 , HOH B:9052 , HOH B:9068
BINDING SITE FOR RESIDUE GOL B 7007
08
AC8
SOFTWARE
ASN B:176 , THR B:271 , MET B:274 , SER B:275 , GLY B:276 , MET B:300 , HOH B:9029 , HOH B:9033
BINDING SITE FOR RESIDUE GOL B 7008
09
AC9
SOFTWARE
GLY A:13 , MET A:58 , SER A:60 , GLY A:90 , THR A:91 , ASP A:92 , HOH A:9083 , HOH A:9166
BINDING SITE FOR RESIDUE GOL A 9001
10
BC1
SOFTWARE
GLY B:13 , THR B:14 , ASP B:59 , SER B:60 , GLY B:90 , THR B:91 , ASP B:92 , HOH B:9138
BINDING SITE FOR RESIDUE GOL B 9002
11
BC2
SOFTWARE
GLY C:13 , THR C:14 , MET C:58 , ASP C:59 , SER C:60 , GLY C:90 , THR C:91 , ASP C:92 , HOH C:9132
BINDING SITE FOR RESIDUE GOL C 9003
12
BC3
SOFTWARE
GLY D:13 , MET D:58 , ASP D:59 , SER D:60 , GLY D:90 , THR D:91 , ASP D:92 , HOH D:9062 , HOH D:9134
BINDING SITE FOR RESIDUE GOL D 9004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ASN_GLN_ASE_3 (A:4-329,B:4-329,C:4-329,D:4-329)
2: ASN_GLN_ASE_1 (A:8-16,B:8-16,C:8-16,D:8-16)
3: ASN_GLN_ASE_2 (A:84-94,B:84-94,C:84-94,D:84-94)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASN_GLN_ASE_3
PS51732
Asparaginase / glutaminase domain profile.
ASPG1_ECOLI
4-329
4
A:4-329
B:4-329
C:4-329
D:4-329
2
ASN_GLN_ASE_1
PS00144
Asparaginase / glutaminase active site signature 1.
ASPG1_ECOLI
8-16
4
A:8-16
B:8-16
C:8-16
D:8-16
3
ASN_GLN_ASE_2
PS00917
Asparaginase / glutaminase active site signature 2.
ASPG1_ECOLI
84-94
4
A:84-94
B:84-94
C:84-94
D:84-94
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2p2da_ (A:)
1b: SCOP_d2p2db_ (B:)
1c: SCOP_d2p2dc_ (C:)
1d: SCOP_d2p2dd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Glutaminase/Asparaginase
(37)
Superfamily
:
Glutaminase/Asparaginase
(37)
Family
:
Glutaminase/Asparaginase
(33)
Protein domain
:
automated matches
(9)
Escherichia coli [TaxId: 562]
(3)
1a
d2p2da_
A:
1b
d2p2db_
B:
1c
d2p2dc_
C:
1d
d2p2dd_
D:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Asparaginase_2p2dD01 (D:5-323)
1b: PFAM_Asparaginase_2p2dD02 (D:5-323)
1c: PFAM_Asparaginase_2p2dD03 (D:5-323)
1d: PFAM_Asparaginase_2p2dD04 (D:5-323)
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Clan
:
no clan defined [family: Asparaginase]
(13)
Family
:
Asparaginase
(13)
Escherichia coli (strain K12)
(4)
1a
Asparaginase-2p2dD01
D:5-323
1b
Asparaginase-2p2dD02
D:5-323
1c
Asparaginase-2p2dD03
D:5-323
1d
Asparaginase-2p2dD04
D:5-323
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (223 KB)
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