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2P2C
Asym. Unit
Info
Asym.Unit (400 KB)
Biol.Unit 1 (136 KB)
Biol.Unit 2 (135 KB)
Biol.Unit 3 (132 KB)
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(1)
Title
:
INHIBITION OF CASPASE-2 BY A DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN)
Authors
:
H Roschitzki Voser, C. Briand, G. Capitani, M. G. Gruetter
Date
:
07 Mar 07 (Deposition) - 22 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.24
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,P,Q (1x)
Biol. Unit 2: E,F,G,H,R,S (1x)
Biol. Unit 3: I,J,K,L,T,U (1x)
Keywords
:
Apoptosis, Caspase, Caspase-2, Inhibition, Protein Design, Protein Libraries, Designed Ankyrin Repeat Proteins, Ribosome Display, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Schweizer, H. Roschitzki-Voser, P. Amstutz, C. Briand, M. Gulotti-Georgieva, E. Prenosil, H. K. Binz, G. Capitani, A. Baici, A. Pluckthun, M. G. Grutter
Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein: Specificity, Structure, And Inhibition Mechanism.
Structure V. 15 625 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 13)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016334 (L7L, chain A, )
2: VAR_016335 (P13A, chain A/C/E/G/I/K, )
3: VAR_016336 (R294G, chain B/D/F/H/J/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016334
V
172
L
CASP2_HUMAN
Polymorphism
4647297
A
L
7
L
2
UniProt
VAR_016335
P
178
A
CASP2_HUMAN
Polymorphism
4647298
A/C/E/G/I/K
P
13
A
3
UniProt
VAR_016336
R
441
G
CASP2_HUMAN
Polymorphism
4647338
B/D/F/H/J/L
R
294
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(4, 19)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:33-159,C:33-159,E:33-159,G:33-15...)
2: CASPASE_HIS (A:99-113,C:99-113,E:99-113,G:99-11...)
3: CASPASE_CYS (A:146-157,C:146-157,E:146-157,G:14...)
4: CASPASE_P10 (H:207-300)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP2_HUMAN
198-324
6
A:33-159
C:33-159
E:33-159
G:33-159
I:33-159
K:33-159
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP2_HUMAN
264-278
6
A:99-113
C:99-113
E:99-113
G:99-113
I:99-113
K:99-113
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP2_HUMAN
311-322
6
A:146-157
C:146-157
E:146-157
G:146-157
I:146-157
K:146-157
4
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP2_HUMAN
354-447
1
H:207-300
[
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Exons
(7, 48)
Info
All Exons
Exon 1.7a (A:7-25 | - | C:8-25 | - | E:8-25 |...)
Exon 1.8a (A:26-84 | - | C:26-84 | - | E:26-8...)
Exon 1.9 (A:85-127 | - | C:85-127 | - | E:85...)
Exon 1.10a (A:128-158 | - | C:128-158 | - | E:...)
Exon 1.10e (A:158-168 | B:209-226 | C:158-168 ...)
Exon 1.11 (- | B:226-262 | - | D:226-262 | - ...)
Exon 1.12d (- | B:263-304 | - | D:263-305 | - ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.5/1.7a
2: Boundary 1.7a/1.8a
3: Boundary 1.8a/1.9
4: Boundary 1.9/1.10a
5: Boundary 1.10a/1.10e
6: Boundary 1.10e/1.11
7: Boundary 1.11/1.12d
8: Boundary 1.12d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000310447
1a
ENSE00001809494
chr7:
142985308-142985622
315
CASP2_HUMAN
1-25
25
0
-
-
1.3a
ENST00000310447
3a
ENSE00001734851
chr7:
142988633-142988783
151
CASP2_HUMAN
25-75
51
0
-
-
1.4b
ENST00000310447
4b
ENSE00001363075
chr7:
142989393-142989560
168
CASP2_HUMAN
76-131
56
0
-
-
1.5
ENST00000310447
5
ENSE00000872252
chr7:
142989710-142989791
82
CASP2_HUMAN
132-159
28
0
-
-
1.7a
ENST00000310447
7a
ENSE00000728843
chr7:
142991323-142991417
95
CASP2_HUMAN
159-190
32
6
A:7-25
-
C:8-25
-
E:8-25
-
G:8-25
-
I:11-25
-
K:9-25
-
19
-
18
-
18
-
18
-
15
-
17
-
1.8a
ENST00000310447
8a
ENSE00001717071
chr7:
142991690-142991866
177
CASP2_HUMAN
191-249
59
6
A:26-84
-
C:26-84
-
E:26-84
-
G:26-84
-
I:26-84
-
K:26-84
-
59
-
59
-
59
-
59
-
59
-
59
-
1.9
ENST00000310447
9
ENSE00001734267
chr7:
142997016-142997144
129
CASP2_HUMAN
250-292
43
6
A:85-127
-
C:85-127
-
E:85-127
-
G:85-127
-
I:85-127
-
K:85-127
-
43
-
43
-
43
-
43
-
43
-
43
-
1.10a
ENST00000310447
10a
ENSE00001720132
chr7:
142997297-142997387
91
CASP2_HUMAN
293-323
31
6
A:128-158
-
C:128-158
-
E:128-158
-
G:128-158
-
I:128-158
-
K:128-158
-
31
-
31
-
31
-
31
-
31
-
31
-
1.10e
ENST00000310447
10e
ENSE00001802806
chr7:
143000877-143001026
150
CASP2_HUMAN
323-373
51
12
A:158-168
B:209-226
C:158-168
D:208-226
E:158-167
F:209-226
G:158-167
H:207-226
I:158-167
J:209-226
K:158-166
L:211-226
11
18
11
19
10
18
10
20
10
18
9
16
1.11
ENST00000310447
11
ENSE00001667926
chr7:
143001767-143001876
110
CASP2_HUMAN
373-409
37
6
-
B:226-262
-
D:226-262
-
F:226-262
-
H:226-262
-
J:226-262
-
L:226-262
-
37
-
37
-
37
-
37
-
37
-
37
1.12d
ENST00000310447
12d
ENSE00001823824
chr7:
143002033-143004789
2757
CASP2_HUMAN
410-452
43
6
-
B:263-304
-
D:263-305
-
F:263-304
-
H:263-304
-
J:263-302
-
L:263-302
-
42
-
43
-
42
-
42
-
40
-
40
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2p2cC00 (C:8-168)
1b: CATH_2p2cE00 (E:8-167)
2a: CATH_2p2cP00 (P:9-166)
2b: CATH_2p2cQ00 (Q:12-169)
2c: CATH_2p2cR00 (R:9-165)
2d: CATH_2p2cU00 (U:13-166)
2e: CATH_2p2cS00 (S:13-165)
2f: CATH_2p2cT00 (T:15-166)
View:
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Classes
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
2p2cC00
C:8-168
1b
2p2cE00
E:8-167
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.20, no name defined]
(65)
Human (Homo sapiens)
(31)
2a
2p2cP00
P:9-166
2b
2p2cQ00
Q:12-169
2c
2p2cR00
R:9-165
2d
2p2cU00
U:13-166
2e
2p2cS00
S:13-165
2f
2p2cT00
T:15-166
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_2p2cL01 (L:211-298)
1b: PFAM_Peptidase_C14_2p2cL02 (L:211-298)
1c: PFAM_Peptidase_C14_2p2cL03 (L:211-298)
1d: PFAM_Peptidase_C14_2p2cL04 (L:211-298)
1e: PFAM_Peptidase_C14_2p2cL05 (L:211-298)
1f: PFAM_Peptidase_C14_2p2cL06 (L:211-298)
1g: PFAM_Peptidase_C14_2p2cL07 (L:211-298)
1h: PFAM_Peptidase_C14_2p2cL08 (L:211-298)
1i: PFAM_Peptidase_C14_2p2cL09 (L:211-298)
1j: PFAM_Peptidase_C14_2p2cL10 (L:211-298)
1k: PFAM_Peptidase_C14_2p2cL11 (L:211-298)
1l: PFAM_Peptidase_C14_2p2cL12 (L:211-298)
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(
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Organisms
(
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(
)
Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
1a
Peptidase_C14-2p2cL01
L:211-298
1b
Peptidase_C14-2p2cL02
L:211-298
1c
Peptidase_C14-2p2cL03
L:211-298
1d
Peptidase_C14-2p2cL04
L:211-298
1e
Peptidase_C14-2p2cL05
L:211-298
1f
Peptidase_C14-2p2cL06
L:211-298
1g
Peptidase_C14-2p2cL07
L:211-298
1h
Peptidase_C14-2p2cL08
L:211-298
1i
Peptidase_C14-2p2cL09
L:211-298
1j
Peptidase_C14-2p2cL10
L:211-298
1k
Peptidase_C14-2p2cL11
L:211-298
1l
Peptidase_C14-2p2cL12
L:211-298
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