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2P1L
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (28 KB)
Biol.Unit 4 (29 KB)
Biol.Unit 5 (214 KB)
Biol.Unit 6 (55 KB)
Biol.Unit 7 (55 KB)
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(1)
Title
:
STRUCTURE OF THE BCL-XL:BECLIN 1 COMPLEX
Authors
:
P. D. Jeffrey, Y. Shi, A. L. Oberstein
Date
:
05 Mar 07 (Deposition) - 13 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (2x)
Biol. Unit 6: E,F,G,H (1x)
Biol. Unit 7: A,B,C,D (1x)
Keywords
:
Apoptosis; Autophagy; Beclin; Bh3 Domain; Bcl
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Oberstein, P. D. Jeffrey, Y. Shi
Crystal Structure Of The Bcl-Xl-Beclin 1 Peptide Complex: Beclin 1 Is A Novel Bh3-Only Protein
J. Biol. Chem. V. 282 13123 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(6, 24)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:4-24,C:4-24,E:4-24,G:4-24)
2: BH4_2 (A:5-24,C:5-24,E:5-24,G:5-24)
3: BH3 (A:86-100,C:86-100,E:86-100,G:86-10...)
4: BCL2_FAMILY (A:90-190,C:90-190,E:90-190,G:90-19...)
5: BH1 (A:130-148,C:130-148,E:130-148,G:13...)
6: BH2 (A:181-192,C:181-192,E:181-192,G:18...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
4
A:4-24
C:4-24
E:4-24
G:4-24
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
4
A:5-24
C:5-24
E:5-24
G:5-24
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
4
A:86-100
C:86-100
E:86-100
G:86-100
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
4
A:90-190
C:90-190
E:90-190
G:90-190
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
4
A:130-148
C:130-148
E:130-148
G:130-148
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
4
A:181-192
C:181-192
E:181-192
G:181-192
[
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Exons
(4, 16)
Info
All Exons
Exon 1.5 (B:105-117 (gaps) | D:105-117 (gaps...)
Exon 1.6 (B:118-128 | D:118-128 | F:118-128 ...)
Exon 2.3a (A:2-188 (gaps) | C:2-188 (gaps) | ...)
Exon 2.4c (A:189-198 | C:189-198 | E:189-198 ...)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary -/2.3a
5: Boundary 2.3a/2.4c
6: Boundary 2.4c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000361523
1a
ENSE00001742671
chr17:
40976310-40976151
160
BECN1_HUMAN
-
0
0
-
-
1.2
ENST00000361523
2
ENSE00001308672
chr17:
40975897-40975766
132
BECN1_HUMAN
1-44
44
0
-
-
1.3
ENST00000361523
3
ENSE00000899042
chr17:
40972859-40972792
68
BECN1_HUMAN
44-66
23
0
-
-
1.4
ENST00000361523
4
ENSE00000899040
chr17:
40971627-40971566
62
BECN1_HUMAN
67-87
21
0
-
-
1.5
ENST00000361523
5
ENSE00000899038
chr17:
40970895-40970805
91
BECN1_HUMAN
87-117
31
4
B:105-117 (gaps)
D:105-117 (gaps)
F:105-117 (gaps)
H:105-117 (gaps)
17
17
17
17
1.6
ENST00000361523
6
ENSE00000899036
chr17:
40970698-40970562
137
BECN1_HUMAN
118-163
46
4
B:118-128
D:118-128
F:118-128
H:118-128
11
11
11
11
1.7
ENST00000361523
7
ENSE00000899034
chr17:
40970433-40970239
195
BECN1_HUMAN
163-228
66
0
-
-
1.8
ENST00000361523
8
ENSE00000899033
chr17:
40968072-40967926
147
BECN1_HUMAN
228-277
50
0
-
-
1.9
ENST00000361523
9
ENSE00000899031
chr17:
40966691-40966542
150
BECN1_HUMAN
277-327
51
0
-
-
1.10
ENST00000361523
10
ENSE00001214699
chr17:
40966026-40965966
61
BECN1_HUMAN
327-347
21
0
-
-
1.11
ENST00000361523
11
ENSE00001214694
chr17:
40963815-40963673
143
BECN1_HUMAN
348-395
48
0
-
-
1.12b
ENST00000361523
12b
ENSE00001754747
chr17:
40962946-40962150
797
BECN1_HUMAN
395-450
56
0
-
-
2.3a
ENST00000376062
3a
ENSE00001469279
chr20:
30310400-30309458
943
B2CL1_HUMAN
1-188
188
4
A:2-188 (gaps)
C:2-188 (gaps)
E:2-188 (gaps)
G:2-188 (gaps)
187
187
187
187
2.4c
ENST00000376062
4c
ENSE00001469296
chr20:
30253889-30252255
1635
B2CL1_HUMAN
189-233
45
4
A:189-198
C:189-198
E:189-198
G:189-198
10
10
10
10
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2p1la_ (A:)
1b: SCOP_d2p1lc_ (C:)
1c: SCOP_d2p1le_ (E:)
1d: SCOP_d2p1lg_ (G:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
Apoptosis regulator Bcl-xL
(38)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d2p1la_
A:
1b
d2p1lc_
C:
1c
d2p1le_
E:
1d
d2p1lg_
G:
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CATH Domains
(0, 0)
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_APG6_2p1lH01 (H:115-128)
1b: PFAM_APG6_2p1lH02 (H:115-128)
1c: PFAM_APG6_2p1lH03 (H:115-128)
1d: PFAM_APG6_2p1lH04 (H:115-128)
2a: PFAM_BH4_2p1lG01 (G:2-26)
2b: PFAM_BH4_2p1lG02 (G:2-26)
2c: PFAM_BH4_2p1lG03 (G:2-26)
2d: PFAM_BH4_2p1lG04 (G:2-26)
3a: PFAM_Bcl_2_2p1lG05 (G:90-188)
3b: PFAM_Bcl_2_2p1lG06 (G:90-188)
3c: PFAM_Bcl_2_2p1lG07 (G:90-188)
3d: PFAM_Bcl_2_2p1lG08 (G:90-188)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: APG6]
(2)
Family
:
APG6
(2)
Homo sapiens (Human)
(2)
1a
APG6-2p1lH01
H:115-128
1b
APG6-2p1lH02
H:115-128
1c
APG6-2p1lH03
H:115-128
1d
APG6-2p1lH04
H:115-128
Clan
:
no clan defined [family: BH4]
(30)
Family
:
BH4
(30)
Homo sapiens (Human)
(26)
2a
BH4-2p1lG01
G:2-26
2b
BH4-2p1lG02
G:2-26
2c
BH4-2p1lG03
G:2-26
2d
BH4-2p1lG04
G:2-26
Clan
:
no clan defined [family: Bcl-2]
(60)
Family
:
Bcl-2
(60)
Homo sapiens (Human)
(44)
3a
Bcl-2-2p1lG05
G:90-188
3b
Bcl-2-2p1lG06
G:90-188
3c
Bcl-2-2p1lG07
G:90-188
3d
Bcl-2-2p1lG08
G:90-188
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