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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
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Asym. Unit
Info
Asym.Unit (48 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SCMH1
Authors
:
N. Herzanych, G. Senisterra, Y. Liu, L. Crombet, P. Loppnau, I. Koziera M. Vedadi, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, J. Min, Structural Genomics Consortium (Sgc)
Date
:
28 Feb 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Keywords
:
Scmh1, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Herzanych, G. Senisterra, Y. Liu, L. Crombet, P. Loppnau, I. Kozieradzki, M. Vedadi, J. Weigelt, M. Sundstrom, C. H. Arrowsmith A. M. Edwards, A. Bochkarev, J. Min
Structure Of Scmh1
To Be Published
[
close entry info
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:115 , LYS A:118
BINDING SITE FOR RESIDUE CL A 301
2
AC2
SOFTWARE
ASN A:145 , HOH A:584
BINDING SITE FOR RESIDUE CL A 302
3
AC3
SOFTWARE
LYS A:142 , GLY A:194 , HOH A:445
BINDING SITE FOR RESIDUE CL A 303
4
AC4
SOFTWARE
PHE A:47 , PRO A:160 , HOH A:484 , HOH A:593
BINDING SITE FOR RESIDUE CL A 304
5
AC5
SOFTWARE
LYS A:63 , ASP A:93 , LYS A:168 , MET A:169 , PO4 A:401 , HOH A:557
BINDING SITE FOR RESIDUE CL A 305
6
AC6
SOFTWARE
MET A:138
BINDING SITE FOR RESIDUE CL A 306
7
AC7
SOFTWARE
ASP A:93 , GLY A:94 , ARG A:130 , PHE A:139 , GLU A:191 , VAL A:192 , CL A:305 , HOH A:560
BINDING SITE FOR RESIDUE PO4 A 401
8
AC8
SOFTWARE
MET A:149 , ALA A:150 , PRO A:151 , SER A:161 , ARG A:213 , ASP A:215 , HOH A:424 , HOH A:512 , HOH A:598
BINDING SITE FOR RESIDUE PO4 A 402
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MBT (A:28-126|A:134-235)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MBT
PS51079
MBT repeat profile.
SCMH1_HUMAN
28-126
134-235
2
A:28-126
A:134-235
[
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Exons
(4, 4)
Info
All Exons
Exon 1.8 (A:27-49)
Exon 1.9 (A:50-128)
Exon 1.10 (A:128-157)
Exon 1.11 (A:158-235)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7b/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
5: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.7b
ENST00000397174
7b
ENSE00001527590
chr1:
41618346-41618271
76
SCMH1_HUMAN
1-26
26
0
-
-
1.8
ENST00000397174
8
ENSE00001726473
chr1:
41617356-41617286
71
SCMH1_HUMAN
26-49
24
1
A:27-49
23
1.9
ENST00000397174
9
ENSE00001731684
chr1:
41608784-41608550
235
SCMH1_HUMAN
50-128
79
1
A:50-128
79
1.10
ENST00000397174
10
ENSE00000870127
chr1:
41582682-41582594
89
SCMH1_HUMAN
128-157
30
1
A:128-157
30
1.11
ENST00000397174
11
ENSE00000768876
chr1:
41579198-41578955
244
SCMH1_HUMAN
158-239
82
1
A:158-235
78
1.12
ENST00000397174
12
ENSE00000768714
chr1:
41541123-41540891
233
SCMH1_HUMAN
239-316
78
0
-
-
1.13a
ENST00000397174
13a
ENSE00000768679
chr1:
41536393-41536267
127
SCMH1_HUMAN
317-359
43
0
-
-
1.14a
ENST00000397174
14a
ENSE00000768644
chr1:
41514562-41514362
201
SCMH1_HUMAN
359-426
68
0
-
-
1.15c
ENST00000397174
15c
ENSE00000574832
chr1:
41512270-41512079
192
SCMH1_HUMAN
426-490
65
0
-
-
1.18a
ENST00000397174
18a
ENSE00001144641
chr1:
41503213-41503034
180
SCMH1_HUMAN
490-550
61
0
-
-
1.19
ENST00000397174
19
ENSE00001144632
chr1:
41499720-41499655
66
SCMH1_HUMAN
550-572
23
0
-
-
1.20b
ENST00000397174
20b
ENSE00001144620
chr1:
41494398-41494256
143
SCMH1_HUMAN
572-619
48
0
-
-
1.21b
ENST00000397174
21b
ENSE00001304971
chr1:
41493991-41492877
1115
SCMH1_HUMAN
620-660
41
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2p0ka1 (A:27-133)
1b: SCOP_d2p0ka2 (A:134-235)
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Classes
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)
(
)
Folds
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(
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Superfamilies
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)
(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Tudor/PWWP/MBT
(72)
Family
:
automated matches
(24)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(20)
1a
d2p0ka1
A:27-133
1b
d2p0ka2
A:134-235
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2p0kA01 (A:27-53,A:158-235)
View:
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Classes
(
)
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)
Architectures
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.160, no name defined]
(35)
Human (Homo sapiens)
(27)
1a
2p0kA01
A:27-53,A:158-235
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_MBT_2p0kA01 (A:171-235)
1b: PFAM_MBT_2p0kA02 (A:171-235)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Tudor
(88)
Family
:
MBT
(24)
Homo sapiens (Human)
(20)
1a
MBT-2p0kA01
A:171-235
1b
MBT-2p0kA02
A:171-235
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]
Atom Selection
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Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (48 KB)
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