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2P0E
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
HUMAN NICOTINAMIDE RIBOSIDE KINASE 1 IN COMPLEX WITH TIAZOFURIN
Authors
:
W. M. Rabeh, W. Tempel, L. Nedyalkova, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, C. Brenner, H. Park, Structural Genomics Consortium (Sgc)
Date
:
28 Feb 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Non-Protein Kinase, Nad+, Nicotinamide Riboside, Nrk1, Tiazofurin, Adp, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Tempel, W. M. Rabeh, K. L. Bogan, P. Belenky, M. Wojcik, H. F. Seidle, L. Nedyalkova, T. Yang, A. A. Sauve, H. W. Park, C. Brenner
Nicotinamide Riboside Kinase Structures Reveal New Pathways To Nad(+).
Plos Biol. V. 5 E263 2007
(for further references see the
PDB file header
)
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
3a: PHOSPHATE ION (PO4a)
4a: (1R)-1-[4-(AMINOCARBONYL)-1,3-THIA... (TIZa)
5a: UNKNOWN ATOM OR ION (UNXa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TIZ
1
Ligand/Ion
(1R)-1-[4-(AMINOCARBONYL)-1,3-THIAZOL-2-YL]-1,4-ANHYDRO-D-RIBITOL
5
UNX
1
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:12 , SER A:13 , GLY A:14 , LYS A:15 , THR A:16 , ARG A:131 , HOH A:302 , HOH A:382 , HOH A:424
BINDING SITE FOR RESIDUE PO4 A 202
2
AC2
SOFTWARE
SER A:82 , HOH A:335 , HOH A:352
BINDING SITE FOR RESIDUE CL A 251
3
AC3
SOFTWARE
ASP A:35 , PHE A:38 , TYR A:54 , ASP A:55 , PHE A:99 , ARG A:128 , GLN A:134 , HOH A:382 , HOH A:385
BINDING SITE FOR RESIDUE TIZ A 201
4
AC4
SOFTWARE
HOH A:383 , HOH A:449 , HOH A:450 , HOH A:463 , HOH A:464
BINDING SITE FOR RESIDUE UNX A 252
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(7, 7)
Info
All Exons
Exon 1.3a (A:0-9)
Exon 1.5 (A:9-39)
Exon 1.6 (A:40-56)
Exon 1.7a (A:56-105 (gaps))
Exon 1.7c (A:105-129)
Exon 1.7d (A:129-165)
Exon 1.8b (A:165-188)
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All Exon Boundaries
1: Boundary 1.1b/1.3a
2: Boundary 1.3a/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7a
5: Boundary 1.7a/1.7c
6: Boundary 1.7c/1.7d
7: Boundary 1.7d/1.8b
8: Boundary 1.8b/1.9b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000361092
1b
ENSE00001849826
chr9:
77703125-77702924
202
NRK1_HUMAN
-
0
0
-
-
1.3a
ENST00000361092
3a
ENSE00002164399
chr9:
77698066-77698003
64
NRK1_HUMAN
1-10
10
1
A:0-9
10
1.5
ENST00000361092
5
ENSE00000803844
chr9:
77692496-77692406
91
NRK1_HUMAN
10-40
31
1
A:9-39
31
1.6
ENST00000361092
6
ENSE00000707162
chr9:
77692123-77692075
49
NRK1_HUMAN
41-57
17
1
A:40-56
17
1.7a
ENST00000361092
7a
ENSE00000707131
chr9:
77684958-77684811
148
NRK1_HUMAN
57-106
50
1
A:56-105 (gaps)
50
1.7c
ENST00000361092
7c
ENSE00000707111
chr9:
77684729-77684658
72
NRK1_HUMAN
106-130
25
1
A:105-129
25
1.7d
ENST00000361092
7d
ENSE00000707110
chr9:
77684018-77683912
107
NRK1_HUMAN
130-166
37
1
A:129-165
37
1.8b
ENST00000361092
8b
ENSE00001391026
chr9:
77681756-77681673
84
NRK1_HUMAN
166-194
29
1
A:165-188
24
1.9b
ENST00000361092
9b
ENSE00001843408
chr9:
77676483-77676116
368
NRK1_HUMAN
194-199
6
0
-
-
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2p0eA00 (A:-4-188)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2p0eA00
A:-4-188
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_AAA_17_2p0eA01 (A:4-188)
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Clans
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)
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
AAA_17
(7)
Homo sapiens (Human)
(7)
1a
AAA_17-2p0eA01
A:4-188
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Chain A
Asymmetric Unit 1
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Asym.Unit (43 KB)
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Header - Biol.Unit 1
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