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2OZK
Biol. Unit 1
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Asym.Unit (195 KB)
Biol.Unit 1 (188 KB)
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(1)
Title
:
STRUCTURE OF AN N-TERMINAL TRUNCATED FORM OF NENDOU (NSP15) FROM SARS-CORONAVIRUS
Authors
:
K. Saikatendu, J. Joseph, V. Subramanian, B. Neuman, M. Buchmeier, R. C. Stevens, P. Kuhn
Date
:
26 Feb 07 (Deposition) - 29 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Endonuclease Nendou, Ribonuclease, Homolog Of Xenopus Xendou, Sars Nsp15, N-Terminal Truncated Construct, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. S. Joseph, K. S. Saikatendu, V. Subramanian, B. W. Neuman, M. J. Buchmeier, R. C. Stevens, P. Kuhn
Crystal Structure Of A Monomeric Form Of Severe Acute Respiratory Syndrome Coronavirus Endonuclease Nsp15 Suggests A Role For Hexamerization As An Allosteric Switch.
J. Virol. V. 81 6700 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(8, 26)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_R1AB_CVHSA_072 (N45S, chain A/B/C/D, )
2: VAR_R1A_CVHSA_035 (A108P, chain A/B/C/D, )
3: VAR_R1A_CVHSA_036 (N139Y, chain A/B/C/D, )
4: VAR_R1A_CVHSA_041 (T192I, chain D, )
5: VAR_R1A_CVHSA_046 (A231V, chain D, )
6: VAR_R1AB_CVHSA_073 (M271I, chain A/B/C/D, )
7: VAR_R1AB_CVHSA_074 (C292R, chain A/B/C/D, )
8: VAR_R1AB_CVHSA_075 (D300N, chain A/B/C/D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_R1AB_CVHSA_072
*
N
6474
S
R1AB_CVHSA
---
---
A/B/C/D
N
45
S
2
UniProt
VAR_R1A_CVHSA_035
*
S
2564
P
R1A_CVHSA
---
---
A/B/C/D
A
108
P
3
UniProt
VAR_R1A_CVHSA_036
*
N
2648
Y
R1A_CVHSA
---
---
A/B/C/D
N
139
Y
4
UniProt
VAR_R1A_CVHSA_041
*
T
2944
I
R1A_CVHSA
---
---
D
T
192
I
5
UniProt
VAR_R1A_CVHSA_046
*
A
3197
V
R1A_CVHSA
---
---
D
A
231
V
6
UniProt
VAR_R1AB_CVHSA_073
*
M
6700
I
R1AB_CVHSA
---
---
A/B/C/D
M
271
I
7
UniProt
VAR_R1AB_CVHSA_074
*
C
6721
R
R1AB_CVHSA
---
---
A/B/C/D
C
292
R
8
UniProt
VAR_R1AB_CVHSA_075
*
D
6729
N
R1AB_CVHSA
---
---
A/B/C/D
D
300
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: M_PRO (A:274-329,B:274-329,D:268-329)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
M_PRO
PS51442
Coronavirus main protease (M-pro) domain profile.
R1A_CVHSA
3241-3546
3
A:274-329
B:274-329
D:268-329
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2ozka2 (A:191-332)
1b: SCOP_d2ozkd2 (D:191-332)
1c: SCOP_d2ozkb2 (B:191-332)
1d: SCOP_d2ozkc2 (C:191-332)
2a: SCOP_d2ozka1 (A:27-190)
2b: SCOP_d2ozkd1 (D:29-190)
2c: SCOP_d2ozkb1 (B:28-190)
2d: SCOP_d2ozkc1 (C:29-190)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
EndoU-like
(7)
Superfamily
:
EndoU-like
(7)
Family
:
Nsp15 C-terminal domain-like
(5)
Protein domain
:
Nsp15, C-terminal domain
(5)
SARS coronavirus [TaxId: 227859]
(3)
1a
d2ozka2
A:191-332
1b
d2ozkd2
D:191-332
1c
d2ozkb2
B:191-332
1d
d2ozkc2
C:191-332
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Nsp15 N-terminal domain-like
(5)
Protein domain
:
Nsp15
(5)
SARS coronavirus [TaxId: 227859]
(3)
2a
d2ozka1
A:27-190
2b
d2ozkd1
D:29-190
2c
d2ozkb1
B:28-190
2d
d2ozkc1
C:29-190
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_NSP11_2ozkD01 (D:29-70)
1b: PFAM_NSP11_2ozkD02 (D:29-70)
1c: PFAM_NSP11_2ozkD03 (D:29-70)
1d: PFAM_NSP11_2ozkD04 (D:29-70)
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Clan
:
no clan defined [family: NSP11]
(2)
Family
:
NSP11
(2)
Human SARS coronavirus (SARS-CoV) (Severe acute respiratory syndrome coronavirus)
(2)
1a
NSP11-2ozkD01
D:29-70
1b
NSP11-2ozkD02
D:29-70
1c
NSP11-2ozkD03
D:29-70
1d
NSP11-2ozkD04
D:29-70
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Asym.Unit (195 KB)
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