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2OZA
Asym. Unit
Info
Asym.Unit (118 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
STRUCTURE OF P38ALPHA COMPLEX
Authors
:
A. White, C. A. Pargellis, J. M. Studts, B. G. Werneburg, B. T. Farmer Ii
Date
:
25 Feb 07 (Deposition) - 03 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Serine/Threonine Kinase, Protein-Protein Complex, P38A, Mk2, Signaling Protein/Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. White, C. A. Pargellis, J. M. Studts, B. G. Werneburg, B. T. Farmer Ii
Molecular Basis Of Mapk-Activated Protein Kinase 2:P38 Assembly
Proc. Natl. Acad. Sci. Usa V. 104 6353 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040753 (A173G, chain A, )
2: VAR_040754 (A361S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040753
A
173
G
MAPK2_HUMAN
Polymorphism
35671930
A
A
173
G
2
UniProt
VAR_040754
A
361
S
MAPK2_HUMAN
Polymorphism
55894011
A
A
361
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(3, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (B:30-54,A:70-93)
2: MAPK (B:59-162)
3: PROTEIN_KINASE_ST (A:182-194)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MK14_MOUSE
30-54
1
B:30-54
MAPK2_HUMAN
70-93
1
A:70-93
2
MAPK
PS01351
MAP kinase signature.
MK14_MOUSE
59-162
1
B:59-162
3
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MAPK2_HUMAN
182-194
1
A:182-194
[
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]
Exons
(22, 22)
Info
All Exons
Exon 1.1a (B:6-39)
Exon 1.4 (B:39-82)
Exon 1.5 (B:83-102)
Exon 1.6 (B:102-139)
Exon 1.7 (B:140-149)
Exon 1.8 (B:150-165)
Exon 1.9 (B:166-204 (gaps))
Exon 1.10 (B:204-228)
Exon 1.11 (B:228-254)
Exon 1.13b (B:255-281)
Exon 1.14 (B:281-339)
Exon 1.15b (B:339-353)
Exon 2.1b (A:51-93)
Exon 2.2 (A:94-140)
Exon 2.3b (A:140-162)
Exon 2.4b (A:162-188)
Exon 2.5 (A:189-231)
Exon 2.6 (A:231-256)
Exon 2.7 (A:256-298 (gaps))
Exon 2.8b (A:298-326)
Exon 2.9b (A:327-353)
Exon 2.9d (A:354-390)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.13b
11: Boundary 1.13b/1.14
12: Boundary 1.14/1.15b
13: Boundary 1.15b/-
14: Boundary -/2.1b
15: Boundary 2.1b/2.2
16: Boundary 2.2/2.3b
17: Boundary 2.3b/2.4b
18: Boundary 2.4b/2.5
19: Boundary 2.5/2.6
20: Boundary 2.6/2.7
21: Boundary 2.7/2.8b
22: Boundary 2.8b/2.9b
23: Boundary 2.9b/2.9d
24: Boundary 2.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSMUST00000062694
1a
ENSMUSE00000880763
chr17:
28828287-28828800
514
MK14_MOUSE
1-39
39
1
B:6-39
34
1.4
ENSMUST00000062694
4
ENSMUSE00000392654
chr17:
28850719-28850848
130
MK14_MOUSE
39-82
44
1
B:39-82
44
1.5
ENSMUST00000062694
5
ENSMUSE00000411519
chr17:
28852328-28852386
59
MK14_MOUSE
83-102
20
1
B:83-102
20
1.6
ENSMUST00000062694
6
ENSMUSE00000448250
chr17:
28861689-28861800
112
MK14_MOUSE
102-139
38
1
B:102-139
38
1.7
ENSMUST00000062694
7
ENSMUSE00000448243
chr17:
28862438-28862467
30
MK14_MOUSE
140-149
10
1
B:140-149
10
1.8
ENSMUST00000062694
8
ENSMUSE00000448235
chr17:
28862742-28862789
48
MK14_MOUSE
150-165
16
1
B:150-165
16
1.9
ENSMUST00000062694
9
ENSMUSE00000877186
chr17:
28865302-28865416
115
MK14_MOUSE
166-204
39
1
B:166-204 (gaps)
39
1.10
ENSMUST00000062694
10
ENSMUSE00000448219
chr17:
28865849-28865920
72
MK14_MOUSE
204-228
25
1
B:204-228
25
1.11
ENSMUST00000062694
11
ENSMUSE00000478801
chr17:
28873956-28874035
80
MK14_MOUSE
228-254
27
1
B:228-254
27
1.13b
ENSMUST00000062694
13b
ENSMUSE00000448207
chr17:
28878733-28878811
79
MK14_MOUSE
255-281
27
1
B:255-281
27
1.14
ENSMUST00000062694
14
ENSMUSE00000448199
chr17:
28881928-28882101
174
MK14_MOUSE
281-339
59
1
B:281-339
59
1.15b
ENSMUST00000062694
15b
ENSMUSE00000472953
chr17:
28883216-28885349
2134
MK14_MOUSE
339-360
22
1
B:339-353
15
2.1b
ENST00000367103
1b
ENSE00001825387
chr1:
206858382-206858853
472
MAPK2_HUMAN
1-93
93
1
A:51-93
43
2.2
ENST00000367103
2
ENSE00001069545
chr1:
206902055-206902194
140
MAPK2_HUMAN
94-140
47
1
A:94-140
47
2.3b
ENST00000367103
3b
ENSE00001069547
chr1:
206902380-206902444
65
MAPK2_HUMAN
140-162
23
1
A:140-162
23
2.4b
ENST00000367103
4b
ENSE00001069548
chr1:
206902741-206902820
80
MAPK2_HUMAN
162-188
27
1
A:162-188
27
2.5
ENST00000367103
5
ENSE00001069551
chr1:
206903317-206903443
127
MAPK2_HUMAN
189-231
43
1
A:189-231
43
2.6
ENST00000367103
6
ENSE00001648220
chr1:
206904033-206904108
76
MAPK2_HUMAN
231-256
26
1
A:231-256
26
2.7
ENST00000367103
7
ENSE00001069544
chr1:
206904483-206904607
125
MAPK2_HUMAN
256-298
43
1
A:256-298 (gaps)
43
2.8b
ENST00000367103
8b
ENSE00001069550
chr1:
206904985-206905070
86
MAPK2_HUMAN
298-326
29
1
A:298-326
29
2.9b
ENST00000367103
9b
ENSE00001069552
chr1:
206905184-206905264
81
MAPK2_HUMAN
327-353
27
1
A:327-353
27
2.9d
ENST00000367103
9d
ENSE00001443498
chr1:
206905920-206907628
1709
MAPK2_HUMAN
354-400
47
1
A:354-390
37
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ozaa_ (A:)
2a: SCOP_d2ozab_ (B:)
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(
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(
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)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
MAP kinase activated protein kinase 2, mapkap2
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d2ozaa_
A:
Protein domain
:
MAP kinase p38
(184)
Mouse (Mus musculus) [TaxId: 10090]
(22)
2a
d2ozab_
B:
[
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CATH Domains
(3, 5)
Info
all CATH domains
1a: CATH_2ozaA01 (A:51-142)
1b: CATH_2ozaB01 (B:6-110,B:320-349)
2a: CATH_2ozaA03 (A:333-390)
3a: CATH_2ozaB02 (B:111-319)
3b: CATH_2ozaA02 (A:143-332)
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(
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2ozaA01
A:51-142
1b
2ozaB01
B:6-110,B:320-349
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Protein kinase-like (PK-like)
(2)
Homologous Superfamily
:
MAP kinase activated protein kinase 2
(2)
Human (Homo sapiens)
(2)
2a
2ozaA03
A:333-390
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
3a
2ozaB02
B:111-319
3b
2ozaA02
A:143-332
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_2ozaA01 (A:64-325)
2a: PFAM_Pkinase_2ozaB01 (B:24-308)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2ozaA01
A:64-325
Mus musculus (Mouse)
(25)
2a
Pkinase-2ozaB01
B:24-308
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Asym.Unit (118 KB)
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